Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB0R81_RS01795 Genome accession   NZ_CP160215
Coordinates   333850..334287 (-) Length   145 a.a.
NCBI ID   WP_069007410.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ213     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 328850..339287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R81_RS01770 (AB0R81_01770) - 329870..331006 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  AB0R81_RS01775 (AB0R81_01775) - 331021..331455 (+) 435 WP_012116767.1 RDD family protein -
  AB0R81_RS01780 (AB0R81_01780) - 331527..331850 (+) 324 WP_007409357.1 YckD family protein -
  AB0R81_RS01785 (AB0R81_01785) - 331954..333390 (+) 1437 WP_025284208.1 family 1 glycosylhydrolase -
  AB0R81_RS01790 (AB0R81_01790) nin/comJ 333431..333829 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  AB0R81_RS01795 (AB0R81_01795) nucA/comI 333850..334287 (-) 438 WP_069007410.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB0R81_RS01800 (AB0R81_01800) hxlB 334644..335201 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  AB0R81_RS01805 (AB0R81_01805) hxlA 335198..335833 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  AB0R81_RS01810 (AB0R81_01810) - 336065..336427 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16041.39 Da        Isoelectric Point: 9.3990

>NTDB_id=1019283 AB0R81_RS01795 WP_069007410.1 333850..334287(-) (nucA/comI) [Bacillus velezensis strain JJ213]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKKGHSGICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1019283 AB0R81_RS01795 WP_069007410.1 333850..334287(-) (nucA/comI) [Bacillus velezensis strain JJ213]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAAAAGGACATTCCGGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634

Multiple sequence alignment