Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   DQM48_RS03365 Genome accession   NZ_LS483348
Coordinates   634526..636724 (+) Length   732 a.a.
NCBI ID   WP_020916511.1    Uniprot ID   A0AB33AL27
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 629526..641724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS03335 (NCTC8738_00683) - 629543..629719 (-) 177 WP_020916505.1 DUF3042 family protein -
  DQM48_RS03340 (NCTC8738_00684) miaA 629907..630806 (+) 900 WP_061407475.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  DQM48_RS03345 (NCTC8738_00685) hflX 630896..632134 (+) 1239 WP_058813778.1 GTPase HflX -
  DQM48_RS03350 (NCTC8738_00686) - 632127..632765 (+) 639 WP_020916508.1 cystathionine gamma-lyase -
  DQM48_RS03355 (NCTC8738_00687) rnz 632806..633735 (+) 930 WP_020916509.1 ribonuclease Z -
  DQM48_RS03360 (NCTC8738_00688) - 633732..634490 (+) 759 WP_020916510.1 SDR family NAD(P)-dependent oxidoreductase -
  DQM48_RS03365 (NCTC8738_00689) recJ 634526..636724 (+) 2199 WP_020916511.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DQM48_RS03370 (NCTC8738_00690) bsh 636894..637871 (+) 978 WP_020916512.1 choloylglycine hydrolase -
  DQM48_RS03375 (NCTC8738_00691) - 637974..638492 (+) 519 WP_004231134.1 adenine phosphoribosyltransferase -
  DQM48_RS03380 (NCTC8738_00692) metA 638600..639544 (+) 945 WP_020916513.1 homoserine O-acetyltransferase MetA -
  DQM48_RS03385 (NCTC8738_00693) - 639623..640297 (+) 675 WP_020916514.1 DnaD domain-containing protein -
  DQM48_RS03390 (NCTC8738_00694) nth 640297..640947 (+) 651 WP_020916515.1 endonuclease III -

Sequence

Protein


Download         Length: 732 a.a.        Molecular weight: 81977.73 Da        Isoelectric Point: 4.4182

>NTDB_id=1019282 DQM48_RS03365 WP_020916511.1 634526..636724(+) (recJ) [Streptococcus lutetiensis strain NCTC8738]
MITSKYNWKNIEKEPDDGFFEVTKKENITALASKILYSRGVDNDEKLAQFLSNDLSQLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIMKEALEMLGAEVQVYLPNRFVDGYGPNESVYKYFIEQQQVSLIITVDNGVAGHEAISYAQ
SQGVDVIVTDHHGLPAELPDAFAIVHPEYPEADYPFRYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEMLKQTERIGLMELMKVSDIDMSDVNEETVGFKIAPQLNALGRLDDPNRAIELLTGFDDEEALSIAQMINAKN
EERKEIVQKIYDEAMGMVDLDKPVQVLAKEGWHPGVLGIVAGRILEHIAQPVIVLNIEDGMAKGSARSIEAINIFHALDD
HRDLFEAFGGHAGAAGMTLPVDNLEQLSQVLCDYIAENDINLAQKKTLIIDEVLDLSEIDLDTVKSLEKIAPFGMDNAKP
VFEIKDLTVKQARTMGQNGTHLKLKIAQGSTAVDLVAFNQGHLVQEFQQAQNLCLAVTLSINKWNGQTTVQLMLEDARVD
GVQLIDIRSKNASLPERVPVLSEDTSASEVVVLDIPDKAEELKSLFVGRQFDAVYFKNHIKRAYYLTGYGTREQFAKLYK
TIYQFPEFDVRYKLKELSHYLNIPDILLVKMIQIFDELDFVTITDGVMVVNKGAEKRSISDSKIYQNLKQEVKFQELMAL
GTPQEIYDWLMN

Nucleotide


Download         Length: 2199 bp        

>NTDB_id=1019282 DQM48_RS03365 WP_020916511.1 634526..636724(+) (recJ) [Streptococcus lutetiensis strain NCTC8738]
ATGATAACAAGTAAATACAATTGGAAAAATATTGAAAAAGAGCCAGATGATGGCTTTTTTGAAGTGACAAAAAAAGAAAA
TATAACGGCATTAGCCAGCAAAATCCTATACAGTCGTGGCGTTGACAACGACGAAAAACTAGCTCAATTTTTATCGAATG
ATTTGTCACAACTTCACGATCCATATCTTTTGCACGATATGGACAAGGCAGTTGCCCGCATTCGTCAAGCTATTGAAAAT
TATGAACAAATCTTGGTTTATGGTGACTATGATGCCGACGGGATGACCAGCGCTAGTATCATGAAAGAAGCGTTGGAAAT
GCTTGGGGCTGAGGTTCAAGTCTATCTTCCTAACCGATTTGTTGATGGTTATGGACCAAATGAATCGGTTTATAAGTATT
TCATCGAGCAACAACAGGTTTCTTTGATTATTACGGTGGATAATGGCGTAGCTGGACATGAAGCTATTAGCTATGCACAA
AGTCAAGGAGTAGATGTCATTGTTACTGACCACCATGGCTTACCAGCAGAGCTTCCAGACGCATTTGCCATTGTACATCC
AGAGTATCCAGAAGCTGACTATCCTTTTAGATATTTAGCAGGATGTGGTGTAGCCTTCAAAGTGGCTTGTGCCCTATTAG
AATCCATCCCAACCGAAATGTTAGACTTAGTTGCTATCGGAACGATTGCCGATATGGTTAGTCTAACAGATGAAAATCGT
ATCATGGTCAAGGTTGGGCTTGAAATGCTCAAGCAGACCGAACGCATTGGTCTCATGGAGCTTATGAAAGTATCTGATAT
TGACATGTCAGATGTTAATGAGGAAACTGTTGGGTTTAAAATTGCACCGCAGCTAAATGCTCTTGGTCGTCTAGATGATC
CAAATCGAGCTATTGAATTATTGACTGGTTTTGATGATGAAGAAGCGCTAAGTATTGCGCAAATGATTAATGCCAAGAAT
GAAGAACGTAAAGAAATTGTTCAAAAAATTTACGATGAAGCCATGGGCATGGTTGATCTTGACAAGCCTGTGCAGGTGTT
GGCAAAAGAAGGCTGGCATCCAGGTGTTCTAGGAATTGTCGCTGGTCGTATTTTGGAGCACATTGCTCAGCCAGTTATTG
TCTTAAACATTGAAGACGGTATGGCAAAAGGCTCTGCTAGAAGTATTGAGGCAATCAATATCTTCCATGCACTTGATGAC
CACCGTGATTTATTTGAAGCTTTTGGTGGACATGCTGGTGCTGCAGGAATGACCTTGCCAGTTGATAACTTAGAGCAATT
GTCACAAGTTTTATGTGATTACATTGCTGAAAATGATATTAATTTAGCTCAGAAAAAGACTTTGATCATTGATGAAGTGC
TGGACTTGTCAGAAATTGATTTGGACACTGTTAAAAGTCTTGAGAAGATCGCACCTTTTGGGATGGATAATGCTAAGCCA
GTCTTTGAAATCAAAGACCTTACCGTTAAACAAGCACGTACCATGGGGCAAAATGGCACTCACTTGAAATTAAAAATTGC
TCAAGGAAGTACGGCGGTTGACCTTGTTGCCTTTAACCAAGGTCATTTGGTACAAGAATTCCAGCAAGCGCAGAACCTGT
GCCTTGCCGTTACTTTGTCAATCAACAAATGGAACGGGCAAACCACAGTTCAGTTGATGCTTGAAGACGCGCGTGTTGAC
GGCGTTCAGTTGATTGATATTCGTTCCAAAAATGCCAGTCTTCCTGAACGTGTTCCTGTTTTGAGTGAAGACACCAGTGC
CAGTGAAGTGGTTGTACTAGATATTCCTGATAAGGCTGAAGAACTCAAATCCCTTTTTGTCGGTCGACAATTTGATGCCG
TTTACTTTAAAAATCACATCAAACGAGCTTATTATTTGACTGGCTATGGAACTCGCGAACAATTTGCTAAGTTGTATAAA
ACGATTTATCAATTCCCTGAATTTGATGTTCGTTACAAGCTGAAAGAATTGAGTCATTATCTTAATATTCCTGATATTCT
TTTGGTCAAAATGATTCAAATTTTTGATGAATTGGATTTTGTAACCATCACAGATGGAGTGATGGTCGTCAATAAAGGTG
CTGAGAAACGCAGTATTTCTGATAGTAAAATTTATCAAAATCTTAAGCAAGAAGTGAAATTTCAAGAGCTCATGGCACTT
GGAACGCCACAAGAAATTTATGACTGGTTGATGAACTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-433)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(582-730)

RecJ OB domain (RecJ_OB)

(450-556)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33AL27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.3

100

0.678
  recJ Bacillus subtilis subsp. subtilis str. 168

37.935

100

0.402

Multiple sequence alignment