Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   DQM48_RS03310 Genome accession   NZ_LS483348
Coordinates   619996..623238 (+) Length   1080 a.a.
NCBI ID   WP_111698368.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 614996..628238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS03295 (NCTC8738_00675) pheS 615774..616817 (+) 1044 WP_014334511.1 phenylalanine--tRNA ligase subunit alpha -
  DQM48_RS03300 (NCTC8738_00676) - 616850..617374 (+) 525 WP_058813772.1 GNAT family N-acetyltransferase -
  DQM48_RS03305 (NCTC8738_00677) pheT 617444..619849 (+) 2406 WP_111698366.1 phenylalanine--tRNA ligase subunit beta -
  DQM48_RS03310 (NCTC8738_00678) rexB 619996..623238 (+) 3243 WP_111698368.1 ATP-dependent nuclease subunit B Machinery gene
  DQM48_RS03315 (NCTC8738_00679) rexA 623228..626854 (+) 3627 WP_111698370.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  DQM48_RS03320 (NCTC8738_00680) - 626949..628094 (-) 1146 WP_111698372.1 cobalamin-independent methionine synthase II family protein -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 124498.26 Da        Isoelectric Point: 5.0113

>NTDB_id=1019280 DQM48_RS03310 WP_111698368.1 619996..623238(+) (rexB) [Streptococcus lutetiensis strain NCTC8738]
MKLLYTDIQFDMTEILARKAMEEAKAGKRVFYIAPNSLSFEKERAVLELLPDQASFAITITRFAQMARYFVLNEPQTKET
IDDNGLAMIFYRALSHFSDTDLKVFGHLKQDTNFIKQLVDLYKELKTANMTVLDLTELHTAEKQEDLVKIFLAVNDILLA
NQYDNQSKIAFFTKQVASGHLDDALENVVLVIDGFTRFSAEEEDLVSLLEEKCAQVIIGTYSSQKAYKATFSTGNVYQAS
LNFLRSLAAKFQTQPEYVESSQKSQEAFAKLSKLFEAKHDFTTSDITLTPDDKKHYAIWDVINQKEEVEHVAKAIRHKLH
QGYRYKDILVLLGDVDSYRLQIGKIFDKYEIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRMEDVVNLLKTGLYGSFTQ
DDLDLFEQYLIYADIKGQSKFGKEFTIAYKGEEHLAYINCMREQIMAPLLALFKAQKQFGSSLLEKLMTFLGAISLPENL
ERMVATFSENDQEKHEQVWRTFTGILEQFQTIFGQEKLSLDEFLALLRSGMLAAQYRVVPASVDVVSVKSYDLVEPHTNK
FVFALGMTQSHFPKIAQNRSLISDEERAKVNETTADNQRFDVISRENIKKNHFAALSLFNSATEELVLSLPQIANESEDK
ESSYLAELASFGVPVLVKGRNRLSTDAEDIGNYKALLSRVIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLVNDGIEL
PLIKDNMQTKPVSDEVIETRFPSDEPINLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDA
SNQPFDNKLDRAIQTTNAEDAFKFIYEEDEESRYSLTVLEDIARSTATILRQDTQIQVENEEEPFELMLANAVRIRGIID
RVDRLSDGSLGVVDYKSSNNTFDIQKFYNGLNPQLVTYMQALRDKKIKSESDKIFGAMYLHMQEPKVDLSSVATTEKILE
NLSKELRYRGLFLEDEKGYLSNGNYHLNDSVYTQEELDILLAYNQKLFLQAAEQIKQGYFLINPYSEDGKTVKGDQLKAI
TRFEADRHMPYARKWFKLPRKDRRQGFLSLMQEEEEKDDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=1019280 DQM48_RS03310 WP_111698368.1 619996..623238(+) (rexB) [Streptococcus lutetiensis strain NCTC8738]
ATGAAATTATTATATACAGATATTCAGTTTGATATGACTGAAATTTTGGCAAGAAAAGCGATGGAAGAGGCTAAAGCTGG
TAAGCGTGTTTTCTACATCGCTCCAAACTCTTTGTCTTTTGAAAAGGAAAGGGCGGTTCTGGAACTTTTACCTGACCAAG
CGTCTTTTGCCATTACCATTACGCGTTTTGCTCAAATGGCACGCTATTTTGTCTTAAATGAGCCTCAGACCAAAGAAACG
ATTGATGATAATGGATTAGCTATGATTTTTTATCGTGCGCTGTCTCATTTTTCGGATACGGATTTGAAAGTTTTTGGGCA
TTTAAAGCAAGATACGAATTTCATCAAGCAATTGGTTGATTTGTATAAGGAATTAAAAACGGCTAACATGACCGTGCTCG
ACTTGACAGAATTGCATACGGCTGAGAAGCAAGAAGATTTGGTGAAAATATTTTTGGCGGTTAATGATATTTTGTTAGCC
AATCAGTATGACAATCAGTCAAAAATTGCATTTTTTACTAAGCAGGTAGCATCGGGTCATTTGGATGATGCGCTTGAAAA
TGTTGTTTTGGTTATCGATGGTTTTACACGTTTTTCAGCAGAAGAGGAAGATTTGGTCAGCCTTTTAGAAGAGAAATGTG
CTCAAGTGATTATCGGAACTTACAGTAGTCAAAAGGCTTATAAGGCGACATTTTCAACTGGGAATGTCTATCAGGCAAGT
TTGAATTTTTTACGTTCTTTGGCAGCTAAATTTCAAACACAGCCAGAATATGTTGAGAGCTCTCAAAAATCTCAAGAAGC
ATTTGCTAAGTTGTCAAAACTCTTTGAAGCTAAGCACGACTTTACAACATCAGATATCACCTTAACGCCAGATGATAAGA
AACATTATGCTATCTGGGATGTTATTAATCAAAAAGAAGAAGTTGAGCATGTGGCAAAGGCTATTCGTCATAAACTTCAC
CAAGGCTATCGCTATAAAGATATTTTGGTGCTTTTGGGTGATGTGGATAGCTATCGTCTGCAAATCGGCAAAATTTTTGA
TAAATATGAAATTCCCTATTATTTTGGAAAAGCAGAGTCGATGAGCGATCATCCTTTGGTGCATTTTATTGATTCCTTGG
AGCGCGTGAAACGTTATCGTTTTCGTATGGAAGATGTGGTTAATCTTTTGAAAACAGGACTTTATGGTTCCTTCACTCAA
GATGATTTAGACCTTTTTGAGCAATATCTGATTTACGCTGATATTAAAGGACAAAGTAAATTTGGTAAGGAGTTCACGAT
TGCTTACAAGGGTGAAGAACACTTAGCTTATATTAATTGCATGCGCGAGCAAATCATGGCGCCTTTGCTAGCTTTATTTA
AGGCACAAAAGCAGTTTGGCTCAAGCCTGCTTGAAAAATTGATGACTTTCTTGGGTGCTATTTCTTTGCCTGAGAATTTA
GAGCGTATGGTAGCTACCTTCTCAGAAAATGACCAAGAAAAGCATGAGCAAGTTTGGCGAACATTTACTGGCATTCTCGA
GCAATTTCAAACGATTTTTGGACAAGAAAAATTGTCTTTGGATGAATTTTTAGCTCTTTTAAGAAGCGGTATGTTGGCTG
CCCAGTACCGCGTAGTGCCAGCAAGTGTTGATGTGGTTTCTGTAAAATCTTATGATTTGGTTGAGCCACATACCAATAAA
TTTGTCTTTGCACTTGGCATGACGCAGTCGCATTTCCCAAAGATTGCGCAAAATCGTAGCTTGATTTCAGATGAAGAACG
TGCCAAGGTTAATGAGACAACAGCTGACAATCAACGTTTTGATGTGATTAGTCGTGAAAATATTAAGAAAAATCATTTTG
CTGCTTTGTCATTGTTTAATTCAGCGACGGAAGAATTGGTGCTCAGTTTGCCACAAATTGCTAACGAGTCAGAAGATAAG
GAATCTTCTTATCTTGCGGAATTAGCTAGCTTTGGTGTGCCTGTTTTGGTTAAGGGGCGAAATCGTTTGTCGACAGATGC
TGAAGACATTGGGAATTATAAAGCGCTCTTATCTCGTGTGATTGAGGTTAATCGCTTAGCTATTGAAGAAGAACGCGAGC
TTAGCAAAGAAGAGCAGACCTTCTGGTCAGTAGCTGTACGTTATCTTCGTAAAAAACTGGTAAATGACGGTATTGAATTG
CCACTTATTAAGGACAATATGCAGACCAAGCCAGTTTCTGATGAAGTGATTGAGACGCGTTTTCCAAGTGATGAGCCGAT
TAATTTATCTTCATCAGCGGTGACAACTTTCTATAACAATCAGTACAAATATTTCTTACAGTATGTGCTTGGTTTACAAG
AGGTTGAAACCATTCACCCTGACGCTAGAAATCACGGAACATACCTTCATCGTGTCTTTGAATTGGTCATGAAAGATGCT
TCTAACCAGCCGTTTGACAATAAATTAGATCGAGCTATTCAAACAACCAACGCCGAAGATGCTTTCAAATTTATCTACGA
AGAAGACGAGGAAAGCCGCTACTCATTGACAGTCTTAGAAGATATTGCTAGAAGCACGGCAACCATTTTACGTCAGGATA
CTCAGATCCAGGTGGAAAATGAAGAAGAACCTTTTGAATTAATGCTTGCCAATGCAGTTCGTATTCGAGGCATTATTGAC
CGTGTGGATCGTTTGTCAGATGGAAGTCTTGGGGTGGTTGATTACAAATCAAGTAACAATACCTTTGATATTCAAAAATT
CTACAATGGTCTTAATCCGCAATTGGTGACTTATATGCAAGCACTTCGCGATAAAAAAATTAAAAGTGAATCAGATAAGA
TTTTTGGAGCCATGTACCTTCACATGCAAGAGCCAAAAGTAGATTTATCATCGGTAGCTACTACAGAGAAAATTTTGGAG
AATTTGTCTAAAGAACTTCGCTATCGTGGCTTGTTCTTAGAAGATGAAAAAGGCTATTTATCAAATGGAAATTATCATCT
TAATGATTCTGTTTACACGCAAGAAGAGTTAGATATTTTACTAGCTTATAATCAAAAATTATTCCTTCAAGCAGCTGAGC
AAATTAAACAAGGATACTTTTTGATTAATCCTTACAGTGAGGATGGTAAGACGGTTAAGGGTGACCAATTAAAAGCTATC
ACACGCTTTGAAGCGGATCGCCACATGCCATACGCACGCAAGTGGTTTAAATTACCAAGAAAAGATAGACGTCAAGGCTT
TTTGAGCCTGATGCAAGAAGAGGAGGAAAAAGATGATCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(749-1026)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.259

100

0.443

Multiple sequence alignment