Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB0R66_RS18230 Genome accession   NZ_CP160214
Coordinates   3684721..3685410 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain JJ747     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3679721..3690410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R66_RS18195 (AB0R66_18195) - 3679918..3680400 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AB0R66_RS18200 (AB0R66_18200) flgM 3680415..3680681 (-) 267 WP_094032533.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R66_RS18205 (AB0R66_18205) - 3680751..3681170 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  AB0R66_RS18210 (AB0R66_18210) comFC 3681244..3681933 (-) 690 WP_217898730.1 phosphoribosyltransferase family protein Machinery gene
  AB0R66_RS18215 (AB0R66_18215) - 3681939..3682223 (-) 285 WP_007407481.1 competence protein ComFB -
  AB0R66_RS18220 (AB0R66_18220) comFA 3682281..3683666 (-) 1386 WP_094032535.1 DEAD/DEAH box helicase Machinery gene
  AB0R66_RS18225 (AB0R66_18225) - 3683775..3684623 (-) 849 WP_003151387.1 DegV family protein -
  AB0R66_RS18230 (AB0R66_18230) degU 3684721..3685410 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R66_RS18235 (AB0R66_18235) degS 3685487..3686650 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB0R66_RS18240 (AB0R66_18240) - 3686873..3687520 (+) 648 WP_061581228.1 YigZ family protein -
  AB0R66_RS18245 (AB0R66_18245) - 3687525..3688760 (+) 1236 WP_025285355.1 LCP family protein -
  AB0R66_RS18250 (AB0R66_18250) - 3688859..3689935 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1019267 AB0R66_RS18230 WP_003219701.1 3684721..3685410(-) (degU) [Bacillus velezensis strain JJ747]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1019267 AB0R66_RS18230 WP_003219701.1 3684721..3685410(-) (degU) [Bacillus velezensis strain JJ747]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment