Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BAMY6614_RS08245 Genome accession   NZ_CP006960
Coordinates   1659504..1660151 (+) Length   215 a.a.
NCBI ID   WP_061862014.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654504..1665151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS08230 (BAMY6614_08650) glpD 1654673..1656340 (+) 1668 WP_003155341.1 glycerol-3-phosphate dehydrogenase -
  BAMY6614_RS08235 (BAMY6614_08655) - 1656480..1658222 (+) 1743 WP_061862012.1 phospho-sugar mutase -
  BAMY6614_RS08240 (BAMY6614_08660) - 1658368..1659504 (+) 1137 WP_061862013.1 GAF domain-containing sensor histidine kinase -
  BAMY6614_RS08245 (BAMY6614_08665) vraR 1659504..1660151 (+) 648 WP_061862014.1 response regulator Regulator
  BAMY6614_RS08250 (BAMY6614_08670) - 1660148..1660672 (+) 525 WP_061862015.1 NADPH-dependent FMN reductase -
  BAMY6614_RS08255 (BAMY6614_08675) - 1660687..1660929 (-) 243 WP_061862016.1 YhdB family protein -
  BAMY6614_RS08260 (BAMY6614_08680) - 1661120..1661443 (+) 324 WP_061862017.1 DUF3889 domain-containing protein -
  BAMY6614_RS08265 (BAMY6614_08685) - 1661488..1662933 (-) 1446 WP_061862018.1 LysM peptidoglycan-binding domain-containing protein -
  BAMY6614_RS08270 (BAMY6614_08690) nsrR 1663114..1663548 (-) 435 WP_061862019.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23970.41 Da        Isoelectric Point: 5.9601

>NTDB_id=101919 BAMY6614_RS08245 WP_061862014.1 1659504..1660151(+) (vraR) [Bacillus amyloliquefaciens UMAF6614]
MKIVIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKKEPDIILMDLSMPDMDGIEAAKIAAERFPDISIVVL
TSYSDQEHVIPALKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSADIVPHVLTHMVQDDQDKEKYDQLTPREKDVLQEI
AKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNVFGKAVKS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=101919 BAMY6614_RS08245 WP_061862014.1 1659504..1660151(+) (vraR) [Bacillus amyloliquefaciens UMAF6614]
ATGAAAATTGTGATTGCTGATGATCATCACGTTGTCCGCAAAGGACTGCGCTATTTCTTCGCCACTCAGGAAGACATTGA
AGTTGTCGGTGAGGCGTCCACCGGTGCTGAAGCGCTTCAGCAAGCTGAAAAGAAGGAGCCGGACATCATTCTGATGGATT
TATCAATGCCTGATATGGACGGCATAGAAGCGGCAAAAATTGCGGCTGAACGATTTCCGGACATCAGTATCGTCGTTTTG
ACGAGCTATTCTGATCAGGAGCATGTCATTCCCGCCCTTAAAGCCGGCGCAAAAGCGTATCAGCTGAAAGACGCCCAGCC
CGATGATTTAGTAAAAACGCTCCGGGAAGTGTATTCCGGACGTTACCGGCTGTCGGCGGATATTGTGCCTCACGTGCTGA
CCCATATGGTTCAGGATGATCAGGATAAGGAAAAATATGATCAGCTGACCCCTCGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGGAAAAGCAATAAGGAAATTGCGGCGGCACTGTTTATTTCAGAAAAAACAGTGAAGACCCACGTGTCCAACCT
GCTGTCAAAGCTGAATCTTTCCGATCGGACGCAGGCGGCATTGTATGCGGTAAAATATAATGTTTTTGGAAAGGCGGTAA
AATCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.286

97.674

0.433
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.391