Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB0R80_RS15815 Genome accession   NZ_CP160213
Coordinates   3198166..3198810 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain JM199     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3193166..3203810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R80_RS15780 (AB0R80_15780) - 3194351..3194782 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  AB0R80_RS15785 (AB0R80_15785) - 3194782..3195123 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  AB0R80_RS15790 (AB0R80_15790) - 3195116..3196597 (+) 1482 WP_327935465.1 Na+/H+ antiporter subunit D -
  AB0R80_RS15795 (AB0R80_15795) - 3196603..3197079 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  AB0R80_RS15800 (AB0R80_15800) - 3197079..3197363 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  AB0R80_RS15805 (AB0R80_15805) mnhG 3197347..3197721 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  AB0R80_RS15810 (AB0R80_15810) - 3197761..3198144 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  AB0R80_RS15815 (AB0R80_15815) comA 3198166..3198810 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  AB0R80_RS15820 (AB0R80_15820) comP 3198891..3201191 (-) 2301 WP_327935464.1 histidine kinase Regulator
  AB0R80_RS15825 (AB0R80_15825) comX 3201205..3201378 (-) 174 WP_012118314.1 competence pheromone ComX -
  AB0R80_RS15830 (AB0R80_15830) - 3201347..3202207 (-) 861 WP_327935463.1 polyprenyl synthetase family protein -
  AB0R80_RS15835 (AB0R80_15835) degQ 3202415..3202555 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  AB0R80_RS15840 (AB0R80_15840) - 3203018..3203359 (+) 342 WP_095352717.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1019185 AB0R80_RS15815 WP_003152052.1 3198166..3198810(-) (comA) [Bacillus velezensis strain JM199]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1019185 AB0R80_RS15815 WP_003152052.1 3198166..3198810(-) (comA) [Bacillus velezensis strain JM199]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
TGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment