Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB0R70_RS16820 Genome accession   NZ_CP160212
Coordinates   3408902..3409591 (-) Length   229 a.a.
NCBI ID   WP_197200179.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM204     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3403902..3414591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R70_RS16785 (AB0R70_16785) fliW 3403993..3404424 (-) 432 WP_015240684.1 flagellar assembly protein FliW -
  AB0R70_RS16790 (AB0R70_16790) - 3404454..3405023 (-) 570 WP_038460037.1 DUF6470 family protein -
  AB0R70_RS16795 (AB0R70_16795) flgL 3405114..3406031 (-) 918 WP_327975730.1 flagellar hook-associated protein FlgL -
  AB0R70_RS16800 (AB0R70_16800) flgK 3406043..3407560 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  AB0R70_RS16805 (AB0R70_16805) - 3407576..3408058 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AB0R70_RS16810 (AB0R70_16810) flgM 3408073..3408339 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R70_RS16815 (AB0R70_16815) - 3408409..3408828 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  AB0R70_RS16820 (AB0R70_16820) comFC 3408902..3409591 (-) 690 WP_197200179.1 double zinc ribbon domain-containing protein Machinery gene
  AB0R70_RS16825 (AB0R70_16825) - 3409597..3409881 (-) 285 WP_007407481.1 competence protein ComFB -
  AB0R70_RS16830 (AB0R70_16830) comFA 3409939..3411324 (-) 1386 WP_220007557.1 DEAD/DEAH box helicase Machinery gene
  AB0R70_RS16835 (AB0R70_16835) - 3411433..3412281 (-) 849 WP_327975732.1 DegV family protein -
  AB0R70_RS16840 (AB0R70_16840) degU 3412379..3413068 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R70_RS16845 (AB0R70_16845) degS 3413145..3414308 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25257.89 Da        Isoelectric Point: 8.0779

>NTDB_id=1019114 AB0R70_RS16820 WP_197200179.1 3408902..3409591(-) (comFC) [Bacillus velezensis strain JM204]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1019114 AB0R70_RS16820 WP_197200179.1 3408902..3409591(-) (comFC) [Bacillus velezensis strain JM204]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAACTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment