Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB0R70_RS11895 Genome accession   NZ_CP160212
Coordinates   2469458..2469793 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM204     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2464458..2474793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R70_RS11875 (AB0R70_11875) gcvT 2465064..2466164 (-) 1101 WP_327975616.1 glycine cleavage system aminomethyltransferase GcvT -
  AB0R70_RS11880 (AB0R70_11880) - 2466588..2468258 (+) 1671 WP_025284995.1 SNF2-related protein -
  AB0R70_RS11885 (AB0R70_11885) - 2468280..2469074 (+) 795 WP_136396493.1 YqhG family protein -
  AB0R70_RS11890 (AB0R70_11890) sinI 2469251..2469424 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  AB0R70_RS11895 (AB0R70_11895) sinR 2469458..2469793 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AB0R70_RS11900 (AB0R70_11900) tasA 2469841..2470626 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  AB0R70_RS11905 (AB0R70_11905) sipW 2470691..2471263 (-) 573 WP_136396777.1 signal peptidase I SipW -
  AB0R70_RS11910 (AB0R70_11910) tapA 2471247..2471918 (-) 672 WP_015240206.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R70_RS11915 (AB0R70_11915) - 2472177..2472506 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  AB0R70_RS11920 (AB0R70_11920) - 2472547..2472726 (-) 180 WP_003153093.1 YqzE family protein -
  AB0R70_RS11925 (AB0R70_11925) comGG 2472783..2473160 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R70_RS11930 (AB0R70_11930) comGF 2473161..2473661 (-) 501 WP_257474763.1 competence type IV pilus minor pilin ComGF -
  AB0R70_RS11935 (AB0R70_11935) comGE 2473570..2473884 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  AB0R70_RS11940 (AB0R70_11940) comGD 2473868..2474305 (-) 438 WP_052827646.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R70_RS11945 (AB0R70_11945) comGC 2474295..2474603 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1019091 AB0R70_RS11895 WP_003153104.1 2469458..2469793(+) (sinR) [Bacillus velezensis strain JM204]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1019091 AB0R70_RS11895 WP_003153104.1 2469458..2469793(+) (sinR) [Bacillus velezensis strain JM204]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment