Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   AB0R71_RS17770 Genome accession   NZ_CP160210
Coordinates   3597874..3597993 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM907     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3592874..3602993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R71_RS17750 (AB0R71_17740) - 3593224..3593736 (+) 513 Protein_3435 bacteriocin biosynthesis protein AlbG -
  AB0R71_RS17755 (AB0R71_17745) - 3593743..3595119 (-) 1377 WP_025285421.1 YncE family protein -
  AB0R71_RS17760 (AB0R71_17750) - 3595159..3596514 (-) 1356 WP_327975751.1 YncE family protein -
  AB0R71_RS17765 (AB0R71_17755) rapF 3596745..3597890 (+) 1146 WP_015240777.1 tetratricopeptide repeat protein Regulator
  AB0R71_RS17770 (AB0R71_17760) phrF 3597874..3597993 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AB0R71_RS17775 (AB0R71_17765) - 3598191..3598394 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  AB0R71_RS17780 (AB0R71_17770) - 3598408..3598611 (+) 204 WP_007407641.1 hypothetical protein -
  AB0R71_RS17785 (AB0R71_17775) - 3598646..3598831 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  AB0R71_RS17790 (AB0R71_17780) - 3599017..3599298 (+) 282 WP_007407643.1 hypothetical protein -
  AB0R71_RS17795 (AB0R71_17785) - 3599342..3599854 (+) 513 WP_023357177.1 stage II sporulation protein M -
  AB0R71_RS17800 (AB0R71_17790) - 3600445..3600663 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  AB0R71_RS17805 (AB0R71_17795) speB 3600831..3601703 (-) 873 WP_072589674.1 agmatinase -
  AB0R71_RS17810 (AB0R71_17800) speE 3601762..3602592 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=1018970 AB0R71_RS17770 WP_015240778.1 3597874..3597993(+) (phrF) [Bacillus velezensis strain JM907]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1018970 AB0R71_RS17770 WP_015240778.1 3597874..3597993(+) (phrF) [Bacillus velezensis strain JM907]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment