Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB0R71_RS14890 Genome accession   NZ_CP160210
Coordinates   3027609..3028253 (-) Length   214 a.a.
NCBI ID   WP_377863099.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM907     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3022609..3033253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R71_RS14855 (AB0R71_14850) - 3023794..3024225 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  AB0R71_RS14860 (AB0R71_14855) - 3024225..3024566 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  AB0R71_RS14865 (AB0R71_14860) - 3024559..3026040 (+) 1482 WP_080130026.1 Na+/H+ antiporter subunit D -
  AB0R71_RS14870 (AB0R71_14865) - 3026046..3026522 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  AB0R71_RS14875 (AB0R71_14870) - 3026522..3026806 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  AB0R71_RS14880 (AB0R71_14875) mnhG 3026790..3027164 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  AB0R71_RS14885 (AB0R71_14880) - 3027204..3027587 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  AB0R71_RS14890 (AB0R71_14885) comA 3027609..3028253 (-) 645 WP_377863099.1 response regulator Regulator
  AB0R71_RS14895 (AB0R71_14890) comP 3028334..3030625 (-) 2292 WP_160223246.1 histidine kinase Regulator
  AB0R71_RS14900 (AB0R71_14895) comX 3030637..3030801 (-) 165 WP_061581461.1 competence pheromone ComX -
  AB0R71_RS14905 (AB0R71_14900) - 3030801..3031712 (-) 912 WP_081111611.1 polyprenyl synthetase family protein -
  AB0R71_RS14910 (AB0R71_14905) degQ 3031864..3032004 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  AB0R71_RS14915 (AB0R71_14910) - 3032469..3032810 (+) 342 WP_069006914.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24255.64 Da        Isoelectric Point: 4.9953

>NTDB_id=1018957 AB0R71_RS14890 WP_377863099.1 3027609..3028253(-) (comA) [Bacillus velezensis strain JM907]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQPMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1018957 AB0R71_RS14890 WP_377863099.1 3027609..3028253(-) (comA) [Bacillus velezensis strain JM907]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTTTCCTATTTCAAAC
AGCCGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86

Multiple sequence alignment