Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DQL56_RS08955 Genome accession   NZ_LS483342
Coordinates   1714985..1715626 (-) Length   213 a.a.
NCBI ID   WP_000357892.1    Uniprot ID   Q8E1N2
Organism   Streptococcus agalactiae strain NCTC11930     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709985..1720626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL56_RS08930 (NCTC11930_01766) - 1710384..1711367 (-) 984 WP_000764455.1 sugar-binding transcriptional regulator -
  DQL56_RS08935 (NCTC11930_01767) - 1711486..1712241 (-) 756 WP_001080746.1 DeoR/GlpR family DNA-binding transcription regulator -
  DQL56_RS08940 (NCTC11930_01768) - 1712362..1713138 (+) 777 WP_000180537.1 glycyl-radical enzyme activating protein -
  DQL56_RS08945 (NCTC11930_01769) - 1713185..1713541 (-) 357 WP_000689608.1 S1 RNA-binding domain-containing protein -
  DQL56_RS08950 (NCTC11930_01770) - 1713543..1714943 (-) 1401 WP_000339133.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQL56_RS08955 (NCTC11930_01771) vraR 1714985..1715626 (-) 642 WP_000357892.1 response regulator transcription factor Regulator
  DQL56_RS08960 (NCTC11930_01772) - 1715619..1716638 (-) 1020 WP_000716170.1 sensor histidine kinase -
  DQL56_RS08965 (NCTC11930_01773) liaF 1716635..1717330 (-) 696 WP_000714456.1 cell wall-active antibiotics response protein LiaF -
  DQL56_RS08970 (NCTC11930_01774) pknB 1717491..1719446 (-) 1956 WP_000614568.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  DQL56_RS08975 (NCTC11930_01775) - 1719446..1720183 (-) 738 WP_000406233.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23650.35 Da        Isoelectric Point: 5.0159

>NTDB_id=1018904 DQL56_RS08955 WP_000357892.1 1714985..1715626(-) (vraR) [Streptococcus agalactiae strain NCTC11930]
MDKIKIVLVDDHEMVRLGLKSFLNLQADVEVIGEASNGLEGIKKALELRPDVVVMDLVMPEMDGVEATLALLKDWPEAAI
LVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIRKVSRGEQAIENEVDKKIKAHDKCPALHEGLTARERDILNLLA
KGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLVPQDDE

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1018904 DQL56_RS08955 WP_000357892.1 1714985..1715626(-) (vraR) [Streptococcus agalactiae strain NCTC11930]
ATGGATAAAATAAAAATTGTACTTGTTGATGACCATGAGATGGTTCGTCTCGGTTTAAAAAGTTTTTTAAACTTACAAGC
TGATGTTGAAGTAATAGGTGAGGCCTCAAATGGTTTAGAAGGCATAAAAAAAGCACTGGAGTTACGTCCAGACGTTGTTG
TTATGGACTTAGTAATGCCTGAAATGGACGGTGTAGAAGCAACCTTAGCATTATTGAAGGATTGGCCAGAAGCTGCCATT
TTAGTCTTAACATCTTACTTGGATAATGAAAAAATTTACCCTGTTATTGAAGCAGGTGCCAAAGGCTATATGTTAAAGAC
CTCAAGCGCAGCAGAGATTCTTAATGCCATTCGTAAAGTTTCAAGGGGAGAACAAGCTATTGAAAATGAAGTAGATAAGA
AAATTAAGGCTCATGATAAATGTCCAGCTTTACATGAGGGCTTAACAGCAAGGGAACGTGATATCCTTAATTTATTAGCC
AAAGGTTATGACAATCAAAGGATTGCTGATGAATTATTTATCTCGTTAAAGACTGTTAAAACTCATGTTTCTAATATTTT
GGGAAAACTAAATGTAGCAGATCGAACTCAAGCAGTTGTCTATGCTTTCCAACACCATTTGGTACCACAAGATGATGAAT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E1N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

54.854

96.714

0.531
  degU Bacillus subtilis subsp. subtilis str. 168

36.726

100

0.39

Multiple sequence alignment