Detailed information NTG1018896

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABX013_RS09475
• Genome accession: NZ_CP160207
• Coordinates: 2142676..2144160 (-)
• Length: 494 a.a.
• NCBI ID: WP_371751528.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel04
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2137676..2149160

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX013_RS09460 (ABX013_00580)	amgK	2139792..2140796 (+)	1005	WP_371751525.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
ABX013_RS09465 (ABX013_18875)	-	2140867..2141844 (-)	978	WP_371751526.1	hypothetical protein	-
ABX013_RS09470 (ABX013_18880)	-	2141915..2142676 (-)	762	WP_371751527.1	class I SAM-dependent methyltransferase	-
ABX013_RS09475 (ABX013_00560)	pilR	2142676..2144160 (-)	1485	WP_371751528.1	sigma-54-dependent transcriptional regulator	Regulator
ABX013_RS09480 (ABX013_18885)	-	2144153..2145727 (-)	1575	WP_084552068.1	ATP-binding protein	-
ABX013_RS09485 (ABX013_00530)	parC	2145734..2148052 (-)	2319	WP_371751529.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 494 a.a.
• Molecular weight: 55557.35 Da
• Isoelectric Point: 5.1258

>NTDB_id=1018896 ABX013_RS09475 WP_371751528.1 2142676..2144160(-) (pilR) [Snodgrassella alvi strain Amel04]
MNNNNQMDLEKPVLIIDDEADIRDLMELTLIKMGLSVKTAAGVAEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHN
LDIPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSENKQKNEDTSVMV
NEQQVRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFG
YKKGSFTGAESDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESG
QFRQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILHDETMTLAPEAKKALLQYSYPGNFRELENILERAIALSKNH
IIEVDDLQIHSYQLDNPRTESAENAGSNLSADSNEEIEDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGIS
FRSMRYRMERLGIV

Nucleotide

• Length: 1485 bp

>NTDB_id=1018896 ABX013_RS09475 WP_371751528.1 2142676..2144160(-) (pilR) [Snodgrassella alvi strain Amel04]
ATGAATAATAATAATCAGATGGACTTAGAAAAGCCGGTACTGATAATAGATGATGAAGCCGATATTCGTGATTTAATGGA
GTTAACCCTGATTAAAATGGGTTTGTCCGTAAAAACTGCCGCTGGTGTAGCTGAGGCAAAAAAGGCTTTACGTACGCATG
CTTTCTCTCTGGTGCTAACGGATATGCGTATGCCGGATGGCTCCGGGCTGGAGATTGTTGATTATATTACTGCCCATAAT
CTGGATATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCGCAGGCTGTACAGGCACTGAAAAATGGTGCTTTCGA
TTACTTACAAAAACCCATTACTCTGGCGCAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAA
CCGAAATAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAAATAAACAAAAAAATGAAGATACTTCCGTAATGGTT
AACGAACAGCAGGTACGTGAACGTTTACTGGGTAATTCTCCGTTAATAACAGAAGTACGTCAGTTGATCAGCAAGCTGGC
TAAAAGTAACGTGCCGGTATACATTGCCGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCGCGCAGTATTCATGAACAGT
CAGAACGCAGAGACAAGGCATTTGTTGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGT
TATAAAAAAGGCAGTTTTACCGGAGCAGAATCAGATAGGGCTGGTTTTTTTCAGCATGCGGACGGCGGAACATTATTTCT
GGATGAAGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGGGCCATTCAGGAACGTGCTGTACGCCGGATTG
GCGAAATGGAAGAAAAGCAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTTGAATCAGGT
CAGTTTCGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTT
GCCGCAGTTAATTCGGGTTTTACTGCAACGAATTTTGCATGATGAAACCATGACATTAGCACCGGAAGCAAAAAAAGCAC
TGTTGCAATACAGTTATCCCGGTAATTTCCGTGAATTGGAGAATATTCTGGAACGTGCTATTGCACTGTCGAAAAATCAT
ATTATTGAGGTAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAG
TAATCTATCCGCAGATAGTAATGAGGAAATTGAGGATTACCAGTTCGGAAAAACTCAGATACAGGATTATCTGGATGAAA
TAGAGAGAAAAATCCTGGAACAGGCTTTAGCGCAAACCCGATATAACCGAACACAGGCCGCCAAATTACTGGGTATCAGT
TTTCGTTCTATGCGTTACCGGATGGAACGGTTAGGGATTGTCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (451-490)

• Response regulator receiver domain (Response_reg) (13-122)

• Sigma-54 interaction domain (Sigma54_activat) (170-335)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	50.928	98.178	0.5
pilR	Acinetobacter baumannii strain A118	41.684	98.583	0.411