Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABX013_RS03375 Genome accession   NZ_CP160207
Coordinates   799862..800668 (-) Length   268 a.a.
NCBI ID   WP_037391728.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel04     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 794862..805668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX013_RS03355 (ABX013_09480) - 795887..796285 (+) 399 WP_110413902.1 DUF350 domain-containing protein -
  ABX013_RS03360 (ABX013_09475) - 796318..797361 (+) 1044 WP_370520361.1 SPFH domain-containing protein -
  ABX013_RS03365 (ABX013_09470) - 797370..799208 (+) 1839 WP_367448905.1 DUF4178 domain-containing protein -
  ABX013_RS03370 (ABX013_09465) speD 799196..799573 (+) 378 WP_100125117.1 adenosylmethionine decarboxylase -
  ABX013_RS03375 (ABX013_17330) comL 799862..800668 (-) 807 WP_037391728.1 outer membrane protein assembly factor BamD Machinery gene
  ABX013_RS03380 (ABX013_09450) rluD 800667..801797 (+) 1131 WP_371751776.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABX013_RS03385 (ABX013_09445) pgeF 801807..802598 (+) 792 WP_100125118.1 peptidoglycan editing factor PgeF -
  ABX013_RS03390 (ABX013_09440) - 802919..803446 (+) 528 WP_078474806.1 DUF6882 domain-containing protein -
  ABX013_RS03395 (ABX013_09435) - 803848..804579 (+) 732 WP_037392580.1 beta-ketoacyl synthase chain length factor -
  ABX013_RS03400 (ABX013_09430) - 804621..805346 (+) 726 WP_232335809.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ABX013_RS03405 (ABX013_09425) - 805350..805607 (+) 258 WP_037392583.1 phosphopantetheine-binding protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30990.95 Da        Isoelectric Point: 6.6493

>NTDB_id=1018882 ABX013_RS03375 WP_037391728.1 799862..800668(-) (comL) [Snodgrassella alvi strain Amel04]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQARFPYGSYAEQAQLDTAY
AYYKDDENDKALVAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVSKLAKQDWSDRDPKANREAYATFALLVQYFPQS
KYADDARAKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQFQNTPNVEEALAIMVSAYANLGEQKLSDDTKRV
LAQNFPNSPYLQKPWQDHNTIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1018882 ABX013_RS03375 WP_037391728.1 799862..800668(-) (comL) [Snodgrassella alvi strain Amel04]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTGTTACTGAGTGCCTGTGCCAGCACAAGTACGGTAGATAAAGATTC
CCAGATTACCCAGGACTGGTCAGTTCAGCGTCTGTACAATGAAGCACATGATGAGCTGATGCACCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGGCACGTTTTCCTTATGGTTCTTATGCCGAACAGGCTCAGCTGGATACGGCTTAT
GCTTATTATAAGGATGATGAAAACGATAAGGCACTGGTTGCTATTGAACAGTTCCAGCGTCTTTATCCGCAACATCCGAA
TATGGATTATGCGCTATATTTGAAAGCGCTGATTCAGCTCAATGAAGACAAATCATTTGTCAGCAAACTGGCAAAACAGG
ACTGGTCTGACCGCGATCCTAAAGCAAACCGTGAAGCTTATGCTACTTTTGCTCTGCTCGTACAGTATTTTCCACAGAGC
AAATATGCTGACGACGCCCGTGCCAAAATGCAGAAACTGCTGGATGCACTGGGTGGTAATGAACTCTCCGTGGCACGCTA
TTATATGAAGCGCGGTGCATGGCTTGCTGCGGTAGGACGGGCACAGACTGTCATTTCTCAATTTCAGAATACGCCAAATG
TTGAAGAAGCTCTGGCAATCATGGTTTCAGCATATGCAAATCTGGGCGAGCAAAAACTCAGTGATGACACCAAACGTGTA
CTGGCACAGAATTTCCCGAACAGCCCGTATTTACAGAAACCATGGCAGGATCACAATACCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

66.667

99.627

0.664
  comL Neisseria gonorrhoeae MS11

66.292

99.627

0.66

Multiple sequence alignment