Detailed information NTG1018864

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABXR98_RS07000
• Genome accession: NZ_CP160206
• Coordinates: 1531792..1533276 (+)
• Length: 494 a.a.
• NCBI ID: WP_084553064.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel03
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1526792..1538276

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXR98_RS06990 (ABXR98_11135)	parC	1527900..1530218 (+)	2319	WP_084553065.1	DNA topoisomerase IV subunit A	-
ABXR98_RS06995 (ABXR98_18735)	-	1530225..1531799 (+)	1575	WP_143556003.1	ATP-binding protein	-
ABXR98_RS07000 (ABXR98_11115)	pilR	1531792..1533276 (+)	1485	WP_084553064.1	sigma-54 dependent transcriptional regulator	Regulator
ABXR98_RS07005 (ABXR98_11110)	-	1533276..1534037 (+)	762	WP_374694700.1	class I SAM-dependent methyltransferase	-
ABXR98_RS07010 (ABXR98_11105)	-	1534108..1535085 (+)	978	WP_025331227.1	hypothetical protein	-
ABXR98_RS07015 (ABXR98_11095)	amgK	1535156..1536160 (-)	1005	WP_374694701.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-

Sequence

Protein

• Length: 494 a.a.
• Molecular weight: 55528.31 Da
• Isoelectric Point: 5.1258

>NTDB_id=1018864 ABXR98_RS07000 WP_084553064.1 1531792..1533276(+) (pilR) [Snodgrassella alvi strain Amel03]
MNNNNQMDLEKPVLIIDDEADIRDLMELTLIKMGLSVKTAAGVAEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHN
LDIPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSENKQKNEDTSAMV
NEQPVRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFG
YKKGSFTGAESDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESG
QFRQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILHDETMTLTPEAKKALLQYSYPGNFRELENILERAIALSKNH
IIEVDDLQIHSYQLDNPRTESAENAGSNLSADSNEEIEDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGIS
FRSMRYRMERLGIV

Nucleotide

• Length: 1485 bp

>NTDB_id=1018864 ABXR98_RS07000 WP_084553064.1 1531792..1533276(+) (pilR) [Snodgrassella alvi strain Amel03]
ATGAATAATAATAATCAGATGGACTTAGAAAAGCCGGTACTGATAATAGATGATGAAGCCGATATTCGTGATTTAATGGA
GTTAACCCTGATTAAAATGGGTTTGTCCGTAAAAACTGCCGCTGGTGTAGCTGAGGCAAAAAAGGCTTTACGTACGCATG
CTTTCTCTCTGGTGCTAACGGATATGCGTATGCCGGATGGCTCAGGGCTGGAGATTGTTGATTATATTACTGCCCATAAT
CTGGATATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCGCAGGCTGTACAGGCACTGAAAAATGGTGCTTTCGA
TTACTTACAAAAACCCATTACTCTGGCGCAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAA
CCGAAATAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAAATAAACAAAAAAATGAAGATACTTCCGCAATGGTT
AACGAACAGCCGGTACGTGAACGTTTACTGGGTAATTCTCCGTTAATAACAGAAGTACGTCAGTTGATCAGCAAGCTGGC
TAAAAGTAACGTGCCGGTATACATTGCCGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCGCGCAGTATTCATGAACAGT
CAGAACGCAGAGACAAGGCATTTGTTGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGT
TATAAAAAAGGCAGTTTTACCGGAGCAGAATCAGATAGGGCTGGTTTTTTTCAGCATGCGGACGGCGGAACATTATTTCT
GGATGAAGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGGGCCATTCAGGAACGTGCTGTACGCCGGATTG
GCGAAATGGAAGAAAAGCAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTTGAATCAGGT
CAGTTTCGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTT
GCCGCAGTTAATTCGGGTTTTACTGCAACGAATTTTGCATGATGAAACCATGACATTAACACCGGAAGCAAAAAAAGCAC
TGTTGCAATACAGTTATCCCGGTAATTTCCGTGAATTGGAGAATATTCTGGAACGTGCTATTGCACTGTCGAAAAATCAT
ATTATTGAGGTAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAG
TAATCTATCCGCAGATAGTAATGAGGAAATTGAGGATTACCAGTTCGGAAAAACTCAGATACAGGATTATCTGGATGAAA
TAGAGAGAAAAATCCTGGAACAGGCTTTAGCGCAAACCCGATATAACCGAACACAGGCCGCCAAATTACTGGGTATCAGT
TTTCGTTCTATGCGTTACCGGATGGAACGGTTAGGGATTGTCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (451-490)

• Response regulator receiver domain (Response_reg) (13-122)

• Sigma-54 interaction domain (Sigma54_activat) (170-335)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	51.76	97.773	0.506
pilR	Acinetobacter baumannii strain A118	42.3	98.583	0.417