Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABXR98_RS02165 Genome accession   NZ_CP160206
Coordinates   425395..426201 (+) Length   268 a.a.
NCBI ID   WP_037391728.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel03     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420395..431201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXR98_RS02135 (ABXR98_02260) - 420457..420714 (-) 258 WP_037392583.1 phosphopantetheine-binding protein -
  ABXR98_RS02140 (ABXR98_02255) - 420718..421443 (-) 726 WP_232335809.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ABXR98_RS02145 (ABXR98_17305) - 421485..422216 (-) 732 WP_037392580.1 beta-ketoacyl synthase chain length factor -
  ABXR98_RS02150 (ABXR98_17310) - 422618..423145 (-) 528 WP_198224597.1 DUF6882 domain-containing protein -
  ABXR98_RS02155 (ABXR98_02235) pgeF 423465..424256 (-) 792 WP_374695066.1 peptidoglycan editing factor PgeF -
  ABXR98_RS02160 (ABXR98_02230) rluD 424266..425396 (-) 1131 WP_374695067.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABXR98_RS02165 (ABXR98_02225) comL 425395..426201 (+) 807 WP_037391728.1 outer membrane protein assembly factor BamD Machinery gene
  ABXR98_RS02170 (ABXR98_02220) speD 426489..426866 (-) 378 WP_025330048.1 adenosylmethionine decarboxylase -
  ABXR98_RS02175 (ABXR98_02215) - 426854..428692 (-) 1839 WP_306176288.1 DUF4178 domain-containing protein -
  ABXR98_RS02180 (ABXR98_02210) - 428701..429744 (-) 1044 WP_084551306.1 SPFH domain-containing protein -
  ABXR98_RS02185 (ABXR98_02205) - 429776..430174 (-) 399 WP_025330045.1 DUF350 domain-containing protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30990.95 Da        Isoelectric Point: 6.6493

>NTDB_id=1018853 ABXR98_RS02165 WP_037391728.1 425395..426201(+) (comL) [Snodgrassella alvi strain Amel03]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQARFPYGSYAEQAQLDTAY
AYYKDDENDKALVAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVSKLAKQDWSDRDPKANREAYATFALLVQYFPQS
KYADDARAKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQFQNTPNVEEALAIMVSAYANLGEQKLSDDTKRV
LAQNFPNSPYLQKPWQDHNTIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1018853 ABXR98_RS02165 WP_037391728.1 425395..426201(+) (comL) [Snodgrassella alvi strain Amel03]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTGTTACTGAGTGCCTGTGCCAGCACAAGTACAGTAGATAAAGATTC
CCAGATTACCCAGGACTGGTCAGTTCAGCGTCTGTACAATGAAGCACATGATGAGCTGATGCACCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGGCACGTTTTCCTTATGGTTCTTATGCCGAACAGGCTCAGCTGGATACGGCTTAT
GCTTATTATAAGGATGATGAAAACGATAAGGCACTGGTTGCTATTGAACAGTTCCAGCGTCTTTATCCGCAACATCCGAA
TATGGATTATGCGCTATATTTGAAAGCGCTGATTCAGCTCAATGAAGACAAATCATTTGTCAGCAAACTGGCAAAACAGG
ACTGGTCTGACCGCGATCCTAAAGCAAACCGTGAAGCTTATGCTACTTTTGCTCTGCTCGTACAGTATTTTCCACAGAGC
AAATATGCTGACGACGCCCGTGCCAAAATGCAGAAACTGCTGGATGCACTGGGTGGTAATGAACTCTCCGTGGCACGGTA
TTATATGAAGCGCGGTGCGTGGCTTGCTGCGGTAGGACGGGCACAGACTGTAATTTCTCAATTTCAGAATACGCCAAATG
TTGAAGAAGCTCTGGCAATCATGGTTTCAGCATATGCAAATCTGGGCGAGCAGAAACTCAGTGATGATACCAAACGTGTA
CTGGCACAGAATTTCCCGAACAGCCCGTATTTACAGAAACCATGGCAGGATCACAATACCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

66.667

99.627

0.664
  comL Neisseria gonorrhoeae MS11

66.292

99.627

0.66

Multiple sequence alignment