Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB0E22_RS04160 Genome accession   NZ_CP160191
Coordinates   837197..838084 (-) Length   295 a.a.
NCBI ID   WP_198461032.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain 39-045     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 832197..843084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0E22_RS04145 (AB0E22_04145) xerC 832701..833591 (-) 891 WP_037543179.1 tyrosine recombinase XerC -
  AB0E22_RS04150 (AB0E22_04150) trmFO 833712..835016 (-) 1305 WP_198461021.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB0E22_RS04155 (AB0E22_04155) topA 835044..837113 (-) 2070 WP_275307122.1 type I DNA topoisomerase -
  AB0E22_RS04160 (AB0E22_04160) dprA 837197..838084 (-) 888 WP_198461032.1 DNA-processing protein DprA Machinery gene
  AB0E22_RS04165 (AB0E22_04165) sucD 838319..839224 (-) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  AB0E22_RS04170 (AB0E22_04170) sucC 839246..840412 (-) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  AB0E22_RS04175 (AB0E22_04175) - 840679..840954 (-) 276 WP_015729039.1 hypothetical protein -
  AB0E22_RS04180 (AB0E22_04180) - 841046..841831 (-) 786 WP_037543184.1 ribonuclease HII -
  AB0E22_RS04185 (AB0E22_04185) ylqF 841824..842696 (-) 873 WP_015729037.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33585.05 Da        Isoelectric Point: 8.6269

>NTDB_id=1018777 AB0E22_RS04160 WP_198461032.1 837197..838084(-) (dprA) [Staphylococcus pseudintermedius strain 39-045]
MKQLLLLLLYAGFSTQQIQSYYPKLCTLTGNLPQRIQAFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTISEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=1018777 AB0E22_RS04160 WP_198461032.1 837197..838084(-) (dprA) [Staphylococcus pseudintermedius strain 39-045]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTATTACCCTAAACTTTGTAC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCGATGCTTTCACACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCTCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTACTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGCTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTATAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTTAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

51.034

98.305

0.502
  dprA Staphylococcus aureus N315

50.69

98.305

0.498

Multiple sequence alignment