Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQL08_RS05570 Genome accession   NZ_LS483336
Coordinates   1101790..1102386 (-) Length   198 a.a.
NCBI ID   WP_002983939.1    Uniprot ID   P65996
Organism   Streptococcus pyogenes strain NCTC12046     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1096790..1107386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL08_RS05555 (NCTC12046_01103) - 1098278..1098973 (-) 696 WP_023611690.1 TIGR02206 family membrane protein -
  DQL08_RS05560 (NCTC12046_01104) - 1099077..1100444 (-) 1368 WP_023611667.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DQL08_RS05565 (NCTC12046_01105) - 1100643..1101689 (-) 1047 WP_002983941.1 D-alanine--D-alanine ligase -
  DQL08_RS05570 (NCTC12046_01106) recR 1101790..1102386 (-) 597 WP_002983939.1 recombination mediator RecR Machinery gene
  DQL08_RS10020 - 1102433..1102615 (-) 183 WP_011888786.1 penicillin-binding protein -
  DQL08_RS05580 (NCTC12046_01107) - 1103175..1103954 (-) 780 WP_023611681.1 formate/nitrite transporter family protein -
  DQL08_RS05585 (NCTC12046_01108) - 1104078..1104620 (-) 543 WP_011017959.1 hypothetical protein -
  DQL08_RS05590 (NCTC12046_01109) - 1104781..1105302 (-) 522 WP_002983930.1 transcription repressor NadR -
  DQL08_RS05595 (NCTC12046_01110) - 1105409..1106104 (-) 696 WP_002983928.1 phosphoglycerate mutase -
  DQL08_RS05600 (NCTC12046_01111) - 1106343..1107278 (+) 936 WP_023611666.1 dihydroorotate oxidase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21644.79 Da        Isoelectric Point: 4.8853

>NTDB_id=1018280 DQL08_RS05570 WP_002983939.1 1101790..1102386(-) (recR) [Streptococcus pyogenes strain NCTC12046]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1018280 DQL08_RS05570 WP_002983939.1 1101790..1102386(-) (recR) [Streptococcus pyogenes strain NCTC12046]
GTGCTTTATCCAACACCCATTGCAAAGTTAATTGACAGTTACTCTAAACTTCCAGGAATTGGTATCAAGACGGCGACGAG
ATTAGCCTTTTATACTATTGGAATGTCAAATGAAGATGTCAATGATTTTGCTAAAAATTTATTAGCAGCTAAAAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGCCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCATGGCTATTATCATGTGCT
TCACGGCTTGATTTCGCCTATGAATGGTGTGGGGCCAGATGACATCAACCTTAAAAGTTTAATTACCCGTCTAATGGATG
GTAAGGTGAGCGAAGTTATCGTAGCTACCAATGCCACAGCAGATGGGGAAGCAACGTCCATGTATATTTCACGTGTCTTG
AAACCAGCCGGGATTAAGGTAACTCGTTTGGCAAGAGGTCTCGCAGTAGGTTCAGATATTGAGTATGCTGATGAAGTAAC
ATTATTGAGAGCTATTGAGAATCGTACTGAACTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65996

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.889

100

0.889
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.769

98.485

0.5