Detailed information NTG1018258

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB0962_RS17815
• Genome accession: NZ_CP160130
• Coordinates: 3663423..3664283 (+)
• Length: 286 a.a.
• NCBI ID: WP_029423718.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain AB37-AUFP
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3658423..3669283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0962_RS17795 (AB0962_17785)	secG	3659028..3659357 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
AB0962_RS17800 (AB0962_17790)	tpiA	3659370..3660164 (-)	795	WP_188137728.1	triose-phosphate isomerase	-
AB0962_RS17805 (AB0962_17795)	pilB	3660455..3662167 (+)	1713	WP_001274991.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB0962_RS17810 (AB0962_17800)	pilC	3662197..3663423 (+)	1227	WP_029423717.1	type II secretion system F family protein	Machinery gene
AB0962_RS17815 (AB0962_17805)	pilD	3663423..3664283 (+)	861	WP_029423718.1	A24 family peptidase	Machinery gene
AB0962_RS17820 (AB0962_17810)	coaE	3664285..3664881 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
AB0962_RS17825 (AB0962_17815)	-	3664878..3665792 (-)	915	WP_000075015.1	DMT family transporter	-
AB0962_RS17830 (AB0962_17820)	rlmB	3665828..3666577 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AB0962_RS17835 (AB0962_17825)	-	3666679..3667005 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
AB0962_RS17840 (AB0962_17830)	-	3667082..3668392 (-)	1311	WP_002055139.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32112.50 Da
• Isoelectric Point: 7.1041

>NTDB_id=1018258 AB0962_RS17815 WP_029423718.1 3663423..3664283(+) (pilD) [Acinetobacter baumannii strain AB37-AUFP]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMFFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1018258 AB0962_RS17815 WP_029423718.1 3663423..3664283(+) (pilD) [Acinetobacter baumannii strain AB37-AUFP]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCGTCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGTTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGTATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	97.902	100	0.979
pilD	Acinetobacter nosocomialis M2	97.552	100	0.976
pilD	Vibrio cholerae strain A1552	53.506	94.755	0.507
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	46.591	92.308	0.43