Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQL28_RS03225 Genome accession   NZ_LS483334
Coordinates   620977..621573 (+) Length   198 a.a.
NCBI ID   WP_111676265.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 615977..626573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL28_RS03195 (NCTC12050_00624) - 616078..617013 (-) 936 WP_021299339.1 dihydroorotate oxidase -
  DQL28_RS03200 (NCTC12050_00625) - 617252..617947 (+) 696 WP_002983928.1 phosphoglycerate mutase -
  DQL28_RS03205 (NCTC12050_00626) - 618054..618575 (+) 522 WP_002983930.1 transcription repressor NadR -
  DQL28_RS03210 (NCTC12050_00627) - 618736..619278 (+) 543 WP_011017959.1 hypothetical protein -
  DQL28_RS03215 (NCTC12050_00628) - 619400..620179 (+) 780 WP_032465091.1 formate/nitrite transporter family protein -
  DQL28_RS09665 - 620739..620930 (+) 192 WP_002983936.1 hypothetical protein -
  DQL28_RS03225 (NCTC12050_00629) recR 620977..621573 (+) 597 WP_111676265.1 recombination mediator RecR Machinery gene
  DQL28_RS03230 (NCTC12050_00630) - 621674..622720 (+) 1047 WP_023610118.1 D-alanine--D-alanine ligase -
  DQL28_RS03235 (NCTC12050_00631) - 622911..624302 (+) 1392 WP_010922441.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DQL28_RS03240 (NCTC12050_00632) - 624382..625077 (+) 696 WP_002983946.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21645.77 Da        Isoelectric Point: 4.7703

>NTDB_id=1018074 DQL28_RS03225 WP_111676265.1 620977..621573(+) (recR) [Streptococcus pyogenes strain NCTC12050]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDET
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1018074 DQL28_RS03225 WP_111676265.1 620977..621573(+) (recR) [Streptococcus pyogenes strain NCTC12050]
GTGCTTTATCCAACACCCATTGCAAAGTTAATTGACAGTTACTCTAAACTTCCAGGAATTGGTATCAAGACGGCGACGAG
ATTAGCCTTTTATACTATTGGAATGTCAAATGAAGATGTCAATGATTTTGCTAAAAACTTATTAGCAGCTAAAAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGTCGTGATGAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCATGGCTATTATCATGTGCT
TCACGGCTTGATTTCGCCTATGAATGGTGTGGGGCCAGATGACATCAACCTTAAAAGTTTAATTACCCGTCTAATGGATG
GTAAGGTGAGCGAAGTTATCGTAGCTACCAATGCCACAGCAGATGGGGAAGCAACGTCCATGTATATTTCACGTGTCTTG
AAACCAGCCGGGATTAAGGTAACTCGTTTGGCAAGAGGTCTCGCAGTAGGTTCAGATATTGAGTATGCTGATGAAGTAAC
ATTATTGAGAGCTATTGAGAATCGTACTGAACTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495