Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABZS48_RS13050 Genome accession   NZ_CP160100
Coordinates   2635497..2635892 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain A_01_sau     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2630497..2640892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZS48_RS13025 (ABZS48_13015) - 2631723..2632127 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ABZS48_RS13030 (ABZS48_13020) - 2632724..2632957 (+) 234 WP_000384523.1 DUF1146 family protein -
  ABZS48_RS13035 (ABZS48_13025) murA 2633068..2634333 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ABZS48_RS13040 (ABZS48_13030) fabZ 2634367..2634807 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ABZS48_RS13045 (ABZS48_13035) - 2634863..2635303 (-) 441 WP_000846751.1 YwpF-like family protein -
  ABZS48_RS13050 (ABZS48_13040) ssb 2635497..2635892 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ABZS48_RS13055 (ABZS48_13045) sceD 2636281..2636976 (+) 696 WP_000752011.1 lytic transglycosylase SceD -
  ABZS48_RS13060 (ABZS48_13050) tenA 2637364..2638053 (+) 690 WP_000396063.1 thiaminase II -
  ABZS48_RS13065 (ABZS48_13055) thiD 2638046..2638876 (+) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ABZS48_RS13070 (ABZS48_13060) thiM 2638860..2639651 (+) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  ABZS48_RS13075 (ABZS48_13065) thiE 2639653..2640294 (+) 642 WP_000483162.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1018056 ABZS48_RS13050 WP_000932694.1 2635497..2635892(+) (ssb) [Staphylococcus aureus strain A_01_sau]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1018056 ABZS48_RS13050 WP_000932694.1 2635497..2635892(+) (ssb) [Staphylococcus aureus strain A_01_sau]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment