Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   DQL30_RS02340 Genome accession   NZ_LS483333
Coordinates   432864..433898 (+) Length   344 a.a.
NCBI ID   WP_002994331.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12048     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 427864..438898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL30_RS02310 (NCTC12048_00458) tsaE 428929..429390 (+) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQL30_RS02315 (NCTC12048_00459) - 429365..429889 (+) 525 WP_063811834.1 GNAT family N-acetyltransferase -
  DQL30_RS02320 (NCTC12048_00460) brpA 429898..431181 (+) 1284 WP_111713633.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL30_RS02325 (NCTC12048_00461) - 431292..431648 (-) 357 WP_014407784.1 hypothetical protein -
  DQL30_RS02330 (NCTC12048_00462) - 431645..432064 (-) 420 WP_002983376.1 HIT family protein -
  DQL30_RS02335 (NCTC12048_00463) pptA 432136..432861 (+) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  DQL30_RS02340 (NCTC12048_00464) pptB 432864..433898 (+) 1035 WP_002994331.1 ABC transporter permease Regulator
  DQL30_RS02345 (NCTC12048_00465) ccrZ 433962..434753 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQL30_RS02350 (NCTC12048_00466) trmB 434753..435388 (+) 636 WP_111684630.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL30_RS02360 (NCTC12048_00468) rimP 435647..436183 (+) 537 WP_172449889.1 ribosome maturation factor RimP -
  DQL30_RS02365 (NCTC12048_00469) nusA 436358..437515 (+) 1158 WP_111713634.1 transcription termination factor NusA -
  DQL30_RS02370 (NCTC12048_00470) rnpM 437531..437827 (+) 297 WP_111713635.1 RNase P modulator RnpM -
  DQL30_RS02375 (NCTC12048_00471) - 437820..438122 (+) 303 WP_111713636.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40242.46 Da        Isoelectric Point: 10.3713

>NTDB_id=1017967 DQL30_RS02340 WP_002994331.1 432864..433898(+) (pptB) [Streptococcus pyogenes strain NCTC12048]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1017967 DQL30_RS02340 WP_002994331.1 432864..433898(+) (pptB) [Streptococcus pyogenes strain NCTC12048]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAGCAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAACGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTTATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427