Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABZU05_RS02060 Genome accession   NZ_CP160094
Coordinates   416882..417052 (-) Length   56 a.a.
NCBI ID   WP_375168438.1    Uniprot ID   -
Organism   Sneathia vaginalis strain CCUG_64370     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 411882..422052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU05_RS02040 (ABZU05_02035) cas1 412153..413145 (+) 993 WP_375168436.1 type V CRISPR-associated endonuclease Cas1 -
  ABZU05_RS02045 (ABZU05_02040) cas2 413150..413422 (+) 273 WP_046328601.1 CRISPR-associated endonuclease Cas2 -
  ABZU05_RS02050 (ABZU05_02045) - 414946..416343 (+) 1398 WP_375168437.1 SWIM zinc finger family protein -
  ABZU05_RS02055 (ABZU05_02050) - 416391..416519 (+) 129 WP_257719624.1 hypothetical protein -
  ABZU05_RS02060 (ABZU05_02055) rcrQ 416882..417052 (-) 171 WP_375168438.1 hypothetical protein Regulator
  ABZU05_RS02065 (ABZU05_02060) - 417095..417721 (+) 627 WP_375168439.1 hypothetical protein -
  ABZU05_RS02070 (ABZU05_02065) - 417736..417945 (+) 210 WP_046328580.1 hypothetical protein -
  ABZU05_RS02075 (ABZU05_02070) - 417991..418194 (+) 204 WP_046329269.1 hypothetical protein -
  ABZU05_RS02080 - 418229..418309 (+) 81 WP_200893839.1 hypothetical protein -
  ABZU05_RS02085 (ABZU05_02075) - 418287..418472 (+) 186 WP_375168440.1 hypothetical protein -
  ABZU05_RS02090 (ABZU05_02080) - 418869..419009 (-) 141 WP_375168441.1 hypothetical protein -
  ABZU05_RS02095 (ABZU05_02085) - 418987..420726 (-) 1740 WP_375168442.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 56 a.a.        Molecular weight: 6274.32 Da        Isoelectric Point: 6.4487

>NTDB_id=1017934 ABZU05_RS02060 WP_375168438.1 416882..417052(-) (rcrQ) [Sneathia vaginalis strain CCUG_64370]
MDKLMHGKTVFVIALRLSTIIDSDVIMVLENGEIIERGTHTQLLAKNNVYANLYNG

Nucleotide


Download         Length: 171 bp        

>NTDB_id=1017934 ABZU05_RS02060 WP_375168438.1 416882..417052(-) (rcrQ) [Sneathia vaginalis strain CCUG_64370]
ATGGATAAATTGATGCATGGAAAAACTGTATTTGTCATAGCACTCAGACTATCAACAATAATAGATTCAGATGTTATCAT
GGTACTTGAAAATGGTGAAATAATAGAACGTGGTACACACACACAATTACTTGCAAAGAATAATGTTTATGCTAATTTAT
ATAATGGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60

98.214

0.589
  comA Streptococcus mitis NCTC 12261

40.351

100

0.411
  comA Streptococcus mitis SK321

40.351

100

0.411
  comA/nlmT Streptococcus mutans UA159

45.098

91.071

0.411

Multiple sequence alignment