Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   DQM36_RS07165 Genome accession   NZ_LS483332
Coordinates   1377095..1378129 (-) Length   344 a.a.
NCBI ID   WP_020837588.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12696     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1372095..1383129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM36_RS07130 (NCTC12696_01406) - 1372871..1373173 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  DQM36_RS07135 (NCTC12696_01407) rnpM 1373166..1373462 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  DQM36_RS07140 (NCTC12696_01408) nusA 1373478..1374635 (-) 1158 WP_002994325.1 transcription termination factor NusA -
  DQM36_RS07145 (NCTC12696_01409) rimP 1374810..1375346 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  DQM36_RS07155 (NCTC12696_01411) trmB 1375605..1376240 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM36_RS07160 (NCTC12696_01412) ccrZ 1376240..1377031 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQM36_RS07165 (NCTC12696_01413) pptB 1377095..1378129 (-) 1035 WP_020837588.1 ABC transporter permease Regulator
  DQM36_RS07170 (NCTC12696_01414) pptA 1378132..1378857 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  DQM36_RS07175 (NCTC12696_01415) - 1378929..1379348 (+) 420 WP_038432458.1 HIT family protein -
  DQM36_RS07180 (NCTC12696_01416) - 1379345..1379701 (+) 357 WP_002988657.1 hypothetical protein -
  DQM36_RS07185 (NCTC12696_01417) brpA 1379812..1381086 (-) 1275 WP_020837594.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQM36_RS07190 (NCTC12696_01418) - 1381095..1381619 (-) 525 WP_009880752.1 GNAT family N-acetyltransferase -
  DQM36_RS07195 (NCTC12696_01419) tsaE 1381594..1382055 (-) 462 WP_009880751.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40260.49 Da        Isoelectric Point: 10.3713

>NTDB_id=1017906 DQM36_RS07165 WP_020837588.1 1377095..1378129(-) (pptB) [Streptococcus pyogenes strain NCTC12696]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFVLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNMLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1017906 DQM36_RS07165 WP_020837588.1 1377095..1378129(-) (pptB) [Streptococcus pyogenes strain NCTC12696]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTGTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATATGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427