Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABZT96_RS00625 Genome accession   NZ_CP160089
Coordinates   117101..117616 (-) Length   171 a.a.
NCBI ID   WP_006586053.1    Uniprot ID   A0AAP3M390
Organism   Lactobacillus mulieris strain 294_F1_4-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 112101..122616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZT96_RS00605 (ABZT96_00600) dnaB 112835..114202 (-) 1368 WP_006586056.1 replicative DNA helicase -
  ABZT96_RS00610 (ABZT96_00605) rplI 114218..114670 (-) 453 WP_006586055.1 50S ribosomal protein L9 -
  ABZT96_RS00615 (ABZT96_00610) - 114690..116708 (-) 2019 WP_006586054.1 DHH family phosphoesterase -
  ABZT96_RS00620 (ABZT96_00615) rpsR 116841..117077 (-) 237 WP_006585377.1 30S ribosomal protein S18 -
  ABZT96_RS00625 (ABZT96_00620) ssb 117101..117616 (-) 516 WP_006586053.1 single-stranded DNA-binding protein Machinery gene
  ABZT96_RS00630 (ABZT96_00625) rpsF 117653..117946 (-) 294 WP_006586052.1 30S ribosomal protein S6 -
  ABZT96_RS00635 (ABZT96_00630) gyrA 118151..120628 (-) 2478 WP_006586051.1 DNA gyrase subunit A -
  ABZT96_RS00640 (ABZT96_00635) gyrB 120640..122595 (-) 1956 WP_006586050.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18651.29 Da        Isoelectric Point: 4.7213

>NTDB_id=1017893 ABZT96_RS00625 WP_006586053.1 117101..117616(-) (ssb) [Lactobacillus mulieris strain 294_F1_4-1]
MINRVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYANAQGERGADFISCVIWRKAAENFCNFTNKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVIVDNFSLLESRKDREARSQNGGYAPQNNGSSYAGNSNQNTNFQANNSAPNTNNAAPQDPFADSGS
TIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1017893 ABZT96_RS00625 WP_006586053.1 117101..117616(-) (ssb) [Lactobacillus mulieris strain 294_F1_4-1]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGCACTACTGGTAGTGGGATTAGCGTTGC
TACTTTTACATTGGCAGTTGATCGTCAATATGCTAATGCACAAGGTGAACGCGGGGCTGATTTTATTAGCTGTGTAATCT
GGAGAAAGGCTGCAGAAAATTTCTGCAATTTCACTAATAAAGGTTCATTAGTTGGTATTGATGGCCGAATCCAAACCAGA
AGCTACGATAATAAGGATGGGCAAAGAGTTTATGTGACTGAAGTTATTGTTGATAATTTCTCACTACTTGAATCACGTAA
AGATCGTGAAGCTCGTTCCCAAAATGGTGGCTATGCGCCACAAAATAACGGAAGTTCATATGCTGGAAATAGTAATCAAA
ATACTAATTTCCAAGCGAATAATAGTGCTCCAAATACCAATAATGCTGCACCACAGGATCCATTTGCTGATTCAGGTTCA
ACAATTGATATTTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.162

100

0.649
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.601

100

0.532

Multiple sequence alignment