Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABZU04_RS06110 | Genome accession | NZ_CP160084 |
| Coordinates | 1298574..1299089 (+) | Length | 171 a.a. |
| NCBI ID | WP_006585376.1 | Uniprot ID | - |
| Organism | Lactobacillus jensenii strain 188_F1_4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1293574..1304089
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABZU04_RS06095 (ABZU04_06100) | gyrB | 1293594..1295549 (+) | 1956 | WP_006585373.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| ABZU04_RS06100 (ABZU04_06105) | gyrA | 1295561..1298038 (+) | 2478 | WP_006585374.1 | DNA gyrase subunit A | - |
| ABZU04_RS06105 (ABZU04_06110) | rpsF | 1298244..1298537 (+) | 294 | WP_006585375.1 | 30S ribosomal protein S6 | - |
| ABZU04_RS06110 (ABZU04_06115) | ssb | 1298574..1299089 (+) | 516 | WP_006585376.1 | single-stranded DNA-binding protein | Machinery gene |
| ABZU04_RS06115 (ABZU04_06120) | rpsR | 1299113..1299349 (+) | 237 | WP_006585377.1 | 30S ribosomal protein S18 | - |
| ABZU04_RS06120 (ABZU04_06125) | - | 1299482..1301500 (+) | 2019 | WP_006588193.1 | DHH family phosphoesterase | - |
| ABZU04_RS06125 (ABZU04_06130) | rplI | 1301520..1301972 (+) | 453 | WP_006588194.1 | 50S ribosomal protein L9 | - |
| ABZU04_RS06130 (ABZU04_06135) | dnaB | 1301988..1303355 (+) | 1368 | WP_006585378.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18734.38 Da Isoelectric Point: 4.7213
>NTDB_id=1017822 ABZU04_RS06110 WP_006585376.1 1298574..1299089(+) (ssb) [Lactobacillus jensenii strain 188_F1_4]
MINRVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYANAQGERGADFINCVIWRKAAENFCNFTNKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVIVDNFSLLESRKDREARSQNSGYAPQNNGSSYAGNSNQNTNFQPNNSAPNTNNAAPQDPFADSGS
TIDISDDDLPF
MINRVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYANAQGERGADFINCVIWRKAAENFCNFTNKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVIVDNFSLLESRKDREARSQNSGYAPQNNGSSYAGNSNQNTNFQPNNSAPNTNNAAPQDPFADSGS
TIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=1017822 ABZU04_RS06110 WP_006585376.1 1298574..1299089(+) (ssb) [Lactobacillus jensenii strain 188_F1_4]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGCACTACTGGTAGTGGGATTAGCGTTGC
TACCTTTACATTAGCTGTTGATCGTCAATATGCTAATGCACAAGGTGAACGCGGAGCTGATTTTATTAACTGTGTAATCT
GGAGAAAGGCTGCAGAAAATTTCTGTAACTTTACTAATAAAGGTTCATTAGTTGGTATTGATGGCCGCATCCAAACCAGA
AGCTACGATAATAAGGATGGGCAAAGAGTTTATGTGACTGAAGTTATTGTTGATAATTTCTCACTACTTGAATCACGTAA
AGATCGTGAAGCTCGTTCCCAAAATAGTGGCTATGCGCCACAAAATAACGGAAGTTCATACGCTGGAAATAGTAATCAAA
ATACTAATTTCCAACCAAATAATAGTGCTCCAAATACCAATAATGCTGCACCACAGGATCCATTTGCTGATTCAGGTTCA
ACAATTGATATTTCGGATGATGATCTTCCATTCTAA
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGCACTACTGGTAGTGGGATTAGCGTTGC
TACCTTTACATTAGCTGTTGATCGTCAATATGCTAATGCACAAGGTGAACGCGGAGCTGATTTTATTAACTGTGTAATCT
GGAGAAAGGCTGCAGAAAATTTCTGTAACTTTACTAATAAAGGTTCATTAGTTGGTATTGATGGCCGCATCCAAACCAGA
AGCTACGATAATAAGGATGGGCAAAGAGTTTATGTGACTGAAGTTATTGTTGATAATTTCTCACTACTTGAATCACGTAA
AGATCGTGAAGCTCGTTCCCAAAATAGTGGCTATGCGCCACAAAATAACGGAAGTTCATACGCTGGAAATAGTAATCAAA
ATACTAATTTCCAACCAAATAATAGTGCTCCAAATACCAATAATGCTGCACCACAGGATCCATTTGCTGATTCAGGTTCA
ACAATTGATATTTCGGATGATGATCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
65.318 |
100 |
0.661 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.179 |
100 |
0.538 |