Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   DQL10_RS07240 Genome accession   NZ_LS483331
Coordinates   1426840..1427874 (-) Length   344 a.a.
NCBI ID   WP_023611934.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12057     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1421840..1432874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL10_RS07205 (NCTC12057_01431) - 1422616..1422918 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  DQL10_RS07210 (NCTC12057_01432) rnpM 1422911..1423207 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  DQL10_RS07215 (NCTC12057_01433) nusA 1423223..1424380 (-) 1158 WP_023611711.1 transcription termination factor NusA -
  DQL10_RS07220 (NCTC12057_01434) rimP 1424555..1425091 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  DQL10_RS07230 (NCTC12057_01436) trmB 1425350..1425985 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL10_RS07235 (NCTC12057_01437) ccrZ 1425985..1426776 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQL10_RS07240 (NCTC12057_01438) pptB 1426840..1427874 (-) 1035 WP_023611934.1 ABC transporter permease Regulator
  DQL10_RS07245 (NCTC12057_01439) pptA 1427877..1428602 (-) 726 WP_023611908.1 ABC transporter ATP-binding protein Regulator
  DQL10_RS07250 (NCTC12057_01440) - 1428674..1429093 (+) 420 WP_023611931.1 HIT family protein -
  DQL10_RS07255 (NCTC12057_01441) - 1429090..1429446 (+) 357 WP_014407784.1 hypothetical protein -
  DQL10_RS07260 (NCTC12057_01442) brpA 1429557..1430840 (-) 1284 WP_023611938.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL10_RS07265 (NCTC12057_01443) - 1430849..1431373 (-) 525 WP_023611919.1 GNAT family N-acetyltransferase -
  DQL10_RS07270 (NCTC12057_01444) tsaE 1431348..1431809 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40260.49 Da        Isoelectric Point: 10.3713

>NTDB_id=1017807 DQL10_RS07240 WP_023611934.1 1426840..1427874(-) (pptB) [Streptococcus pyogenes strain NCTC12057]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSMLKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1017807 DQL10_RS07240 WP_023611934.1 1426840..1427874(-) (pptB) [Streptococcus pyogenes strain NCTC12057]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATGTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

42.733

100

0.427
  pptB Streptococcus salivarius strain HSISS4

42.442

100

0.424