Detailed information NTG0101776

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: W903_RS10060
• Genome accession: NZ_CP006910
• Coordinates: 1991001..1992110 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264872.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae CNCTC 10/84
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1986001..1997110

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
W903_RS10035 (W903_2054)	-	1986373..1987212 (-)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-
W903_RS10040 (W903_2055)	pgsA	1987212..1987754 (-)	543	WP_000239225.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
W903_RS10045 (W903_2056)	yfmH	1987877..1989160 (-)	1284	WP_000217764.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
W903_RS10050 (W903_2057)	yfmF	1989162..1990406 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
W903_RS10055 (W903_2058)	yaaA	1990645..1990998 (+)	354	WP_000384867.1	S4 domain-containing protein YaaA	-
W903_RS10060 (W903_2059)	recF	1991001..1992110 (+)	1110	WP_000264872.1	DNA replication/repair protein RecF	Machinery gene
W903_RS10065 (W903_2060)	-	1992122..1992988 (-)	867	WP_000398683.1	GRP family sugar transporter	-
W903_RS10070 (W903_2061)	-	1993044..1993706 (-)	663	WP_001865840.1	helix-turn-helix transcriptional regulator	-
W903_RS10075 (W903_2062)	guaB	1993781..1995262 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
W903_RS10080 (W903_2063)	-	1995419..1995904 (-)	486	WP_001034427.1	arginine repressor	-
W903_RS10085 (W903_2064)	-	1995914..1996594 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42470.29 Da
• Isoelectric Point: 7.5270

>NTDB_id=101776 W903_RS10060 WP_000264872.1 1991001..1992110(+) (recF) [Streptococcus agalactiae CNCTC 10/84]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLNIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=101776 W903_RS10060 WP_000264872.1 1991001..1992110(+) (recF) [Streptococcus agalactiae CNCTC 10/84]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCACCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAAACATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGTCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGTATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAACATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAACGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.636	98.374	0.626
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447