Detailed information NTG1017698

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABX042_RS10390
• Genome accession: NZ_CP160076
• Coordinates: 2307411..2308895 (+)
• Length: 494 a.a.
• NCBI ID: WP_370578814.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel01
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2302411..2313895

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX042_RS10380 (ABX042_03050)	parC	2303516..2305837 (+)	2322	WP_367455527.1	DNA topoisomerase IV subunit A	-
ABX042_RS10385 (ABX042_16755)	-	2305844..2307418 (+)	1575	WP_084565508.1	ATP-binding protein	-
ABX042_RS10390 (ABX042_03065)	pilR	2307411..2308895 (+)	1485	WP_370578814.1	sigma-54-dependent transcriptional regulator	Regulator
ABX042_RS10395 (ABX042_16760)	-	2308895..2309656 (+)	762	WP_370578815.1	class I SAM-dependent methyltransferase	-
ABX042_RS10400 (ABX042_03080)	-	2309727..2310704 (+)	978	WP_370578816.1	hypothetical protein	-
ABX042_RS10405 (ABX042_03085)	amgK	2310775..2311779 (-)	1005	WP_367455537.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-

Sequence

Protein

• Length: 494 a.a.
• Molecular weight: 55535.35 Da
• Isoelectric Point: 5.2104

>NTDB_id=1017698 ABX042_RS10390 WP_370578814.1 2307411..2308895(+) (pilR) [Snodgrassella alvi strain Amel01]
MNNNNQMDLEKPVLIIDDEADIRDLMELTLIKMGLSVKTAAGVAEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHN
LDIPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSENKQKNEDTSAMV
NEQQVRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFG
YKKGSFTGAESDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESG
QFRQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILNDETMTLTPEAKKALLQYSYPGNFRELENILERAIALSKNH
IIDIDDLQIHSYQLDNPRTESAENAGSNLSADSNEEIKDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGIS
FRSMRYRMERLGIV

Nucleotide

• Length: 1485 bp

>NTDB_id=1017698 ABX042_RS10390 WP_370578814.1 2307411..2308895(+) (pilR) [Snodgrassella alvi strain Amel01]
ATGAATAATAATAATCAGATGGACTTAGAAAAGCCGGTACTGATAATAGATGATGAAGCCGATATTCGTGATTTAATGGA
GTTAACCCTGATTAAAATGGGTTTGTCCGTAAAAACTGCCGCTGGTGTAGCTGAGGCAAAAAAGGCTTTACGTACGCATG
CTTTCTCTCTGGTGCTAACGGATATGCGTATGCCGGATGGATCAGGGCTGGAGATTGTTGATTATATTACTGCCCATAAT
CTGGATATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCGCAGGCTGTACAGGCACTGAAAAATGGTGCTTTCGA
TTACTTACAAAAACCCATTACTCTGGCGCAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAA
CCGAAATAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAAATAAACAAAAAAATGAAGATACTTCCGCAATGGTT
AACGAACAGCAGGTACGTGAACGTTTACTGGGTAATTCTCCGTTAATAACAGAAGTACGTCAGTTGATCAGCAAGCTGGC
TAAAAGTAATGTGCCGGTATACATTGCCGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCGCGCAGTATTCATGAACAGT
CAGAACGCAGAGACAAGGCATTTGTTGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGT
TATAAAAAAGGCAGTTTTACCGGAGCAGAATCAGATAGGGCCGGTTTTTTCCAGCATGCGGACGGCGGAACATTATTTCT
GGATGAGGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGAGCCATTCAGGAACGTGCTGTACGCCGGATTG
GCGAAATGGAAGAAAAACAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTTGAATCAGGT
CAGTTTCGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTT
GCCGCAGTTAATTCGGGTTTTACTGCAACGAATTTTGAATGATGAAACCATGACATTAACACCGGAAGCAAAAAAAGCAC
TGTTGCAATACAGTTATCCCGGTAATTTCCGTGAATTGGAGAATATTCTGGAACGTGCTATTGCACTGTCGAAAAATCAT
ATTATTGATATAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAG
TAATCTATCCGCAGATAGTAATGAGGAAATTAAGGATTACCAGTTCGGAAAAACTCAGATACAGGATTATCTGGATGAAA
TAGAGAGAAAAATCCTGGAACAGGCTTTGGCGCAAACCCGATATAACCGAACACAGGCCGCCAAATTACTGGGTATCAGT
TTTCGTTCTATGCGTTACCGGATGGAACGGTTAGGGATTGTCTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (13-122)

• Bacterial regulatory protein, Fis family (HTH_8) (451-490)

• Sigma-54 interaction domain (Sigma54_activat) (170-335)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	51.134	98.178	0.502
pilR	Acinetobacter baumannii strain A118	42.916	98.583	0.423