Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABX042_RS05335 Genome accession   NZ_CP160076
Coordinates   1180246..1181052 (+) Length   268 a.a.
NCBI ID   WP_037391728.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel01     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1175246..1186052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX042_RS05305 (ABX042_10980) - 1175307..1175564 (-) 258 WP_037392583.1 phosphopantetheine-binding protein -
  ABX042_RS05310 (ABX042_10985) - 1175568..1176293 (-) 726 WP_232335809.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ABX042_RS05315 (ABX042_10990) - 1176335..1177066 (-) 732 WP_037392580.1 beta-ketoacyl synthase chain length factor -
  ABX042_RS05320 (ABX042_10995) - 1177468..1177995 (-) 528 WP_078474806.1 DUF6882 domain-containing protein -
  ABX042_RS05325 (ABX042_11000) pgeF 1178316..1179107 (-) 792 WP_078474807.1 peptidoglycan editing factor PgeF -
  ABX042_RS05330 (ABX042_11005) rluD 1179117..1180247 (-) 1131 WP_367454256.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABX042_RS05335 (ABX042_11010) comL 1180246..1181052 (+) 807 WP_037391728.1 outer membrane protein assembly factor BamD Machinery gene
  ABX042_RS05340 (ABX042_11015) speD 1181351..1181728 (-) 378 WP_025330048.1 adenosylmethionine decarboxylase -
  ABX042_RS05345 (ABX042_15970) - 1181716..1183554 (-) 1839 WP_370579151.1 DUF4178 domain-containing protein -
  ABX042_RS05350 (ABX042_11035) - 1183563..1184606 (-) 1044 WP_084564733.1 SPFH domain-containing protein -
  ABX042_RS05355 (ABX042_11040) - 1184639..1184977 (-) 339 WP_370385846.1 DUF350 domain-containing protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30990.95 Da        Isoelectric Point: 6.6493

>NTDB_id=1017687 ABX042_RS05335 WP_037391728.1 1180246..1181052(+) (comL) [Snodgrassella alvi strain Amel01]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQARFPYGSYAEQAQLDTAY
AYYKDDENDKALVAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVSKLAKQDWSDRDPKANREAYATFALLVQYFPQS
KYADDARAKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQFQNTPNVEEALAIMVSAYANLGEQKLSDDTKRV
LAQNFPNSPYLQKPWQDHNTIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1017687 ABX042_RS05335 WP_037391728.1 1180246..1181052(+) (comL) [Snodgrassella alvi strain Amel01]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTGTTACTGAGTGCCTGTGCCAGCACAAGTACGGTAGATAAAGATTC
CCAGATTACCCAGGACTGGTCAGTTCAGCGTCTGTACAATGAAGCACATGATGAGCTGATGCACCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGGCACGTTTTCCTTATGGTTCTTATGCCGAACAGGCTCAGCTGGATACGGCTTAT
GCTTATTATAAGGATGATGAAAACGATAAGGCACTGGTTGCGATTGAACAGTTCCAGCGTCTTTATCCGCAACATCCGAA
TATGGATTATGCGCTATATTTGAAAGCGCTGATTCAGCTCAATGAAGACAAATCATTTGTCAGCAAACTGGCAAAACAGG
ACTGGTCTGACCGCGATCCTAAAGCAAACCGTGAAGCTTATGCTACTTTTGCTCTGCTCGTACAGTATTTTCCACAGAGC
AAATATGCTGACGACGCCCGTGCCAAAATGCAGAAACTGCTGGATGCACTGGGTGGTAATGAACTCTCCGTGGCACGGTA
TTATATGAAGCGCGGTGCGTGGCTTGCTGCGGTAGGACGGGCACAGACTGTCATTTCTCAATTTCAGAACACGCCAAATG
TTGAAGAAGCTCTGGCAATCATGGTTTCAGCATATGCAAATCTGGGCGAGCAGAAACTCAGTGATGATACCAAACGTGTA
CTGGCACAGAATTTCCCGAACAGCCCGTATTTACAGAAACCATGGCAGGATCACAATACCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

66.667

99.627

0.664
  comL Neisseria gonorrhoeae MS11

66.292

99.627

0.66

Multiple sequence alignment