Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABX026_RS10705 Genome accession   NZ_CP160075
Coordinates   2412031..2412837 (+) Length   268 a.a.
NCBI ID   WP_038648650.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel10     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2407031..2417837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX026_RS10675 (ABX026_08225) - 2407091..2407348 (-) 258 WP_025330055.1 phosphopantetheine-binding protein -
  ABX026_RS10680 (ABX026_08230) - 2407352..2408077 (-) 726 WP_371751344.1 lysophospholipid acyltransferase family protein -
  ABX026_RS10685 (ABX026_08235) - 2408119..2408850 (-) 732 WP_084548062.1 beta-ketoacyl synthase chain length factor -
  ABX026_RS10690 (ABX026_08240) - 2409253..2409780 (-) 528 WP_367423899.1 DUF6882 domain-containing protein -
  ABX026_RS10695 (ABX026_08245) pgeF 2410101..2410892 (-) 792 WP_371750992.1 peptidoglycan editing factor PgeF -
  ABX026_RS10700 (ABX026_08250) rluD 2410902..2412032 (-) 1131 WP_084553288.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABX026_RS10705 (ABX026_08255) comL 2412031..2412837 (+) 807 WP_038648650.1 outer membrane protein assembly factor BamD Machinery gene
  ABX026_RS10710 (ABX026_08260) speD 2413136..2413513 (-) 378 WP_025330048.1 adenosylmethionine decarboxylase -
  ABX026_RS10715 (ABX026_08265) - 2413501..2415339 (-) 1839 WP_371750993.1 DUF4178 domain-containing protein -
  ABX026_RS10720 (ABX026_08270) - 2415348..2416391 (-) 1044 WP_370520361.1 SPFH domain-containing protein -
  ABX026_RS10725 (ABX026_08275) - 2416424..2416822 (-) 399 WP_025330045.1 DUF350 domain-containing protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30962.90 Da        Isoelectric Point: 6.6493

>NTDB_id=1017675 ABX026_RS10705 WP_038648650.1 2412031..2412837(+) (comL) [Snodgrassella alvi strain Amel10]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQARFPYGSYAEQAQLDTAY
AYYKDDENDKALAAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVSKLAKQDWSDRDPKANREAYATFALLVQYFPQS
KYADDARAKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQFQNTPNVEEALAIMVSAYANLGEQKLSDDTKRV
LAQNFPNSPYLQKPWQDHNTIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1017675 ABX026_RS10705 WP_038648650.1 2412031..2412837(+) (comL) [Snodgrassella alvi strain Amel10]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTGTTACTGAGTGCCTGTGCCAGCACAAGTACGGTAGATAAAGATTC
CCAGATTACCCAGGACTGGTCAGTTCAGCGTCTGTACAATGAAGCACATGATGAGCTGATGCACCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGGCACGTTTTCCTTATGGTTCTTATGCCGAACAGGCTCAGCTGGATACGGCTTAT
GCTTATTATAAGGATGATGAGAACGATAAAGCACTGGCTGCTATTGAACAGTTCCAGCGTCTTTATCCGCAACATCCGAA
TATGGATTATGCGCTATATTTGAAAGCGCTGATTCAGCTCAATGAAGACAAATCATTTGTCAGCAAACTGGCAAAACAGG
ACTGGTCTGACCGCGATCCTAAAGCAAACCGTGAAGCTTATGCTACTTTTGCTCTGCTCGTACAGTATTTTCCACAGAGC
AAATATGCTGACGACGCCCGTGCCAAAATGCAGAAACTGCTGGATGCACTGGGTGGTAATGAACTCTCCGTGGCACGCTA
TTATATGAAGCGCGGTGCGTGGCTTGCTGCGGTAGGACGGGCACAGACTGTCATTTCTCAATTTCAGAACACGCCAAATG
TTGAAGAAGCTCTGGCAATCATGGTTTCAGCATATGCAAATCTGGGCGAGCAGAAACTCAGTGATGATACCAAACGTGTA
CTGGCACAGAATTTCCCGAACAGCCCGTATTTACAGAAACCATGGCAGGATCACAATACCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

67.041

99.627

0.668
  comL Neisseria gonorrhoeae MS11

66.667

99.627

0.664

Multiple sequence alignment