Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   DQL25_RS02405 Genome accession   NZ_LS483330
Coordinates   456749..457783 (+) Length   344 a.a.
NCBI ID   WP_002988663.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8328     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 451749..462783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL25_RS02375 (NCTC8328_00472) tsaE 452814..453275 (+) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQL25_RS02380 (NCTC8328_00473) - 453250..453774 (+) 525 WP_002983369.1 GNAT family N-acetyltransferase -
  DQL25_RS02385 (NCTC8328_00474) brpA 453783..455066 (+) 1284 WP_030126322.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL25_RS02390 (NCTC8328_00475) - 455177..455533 (-) 357 WP_009880754.1 hypothetical protein -
  DQL25_RS02395 (NCTC8328_00476) - 455530..455949 (-) 420 WP_002983376.1 HIT family protein -
  DQL25_RS02400 (NCTC8328_00477) pptA 456021..456746 (+) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  DQL25_RS02405 (NCTC8328_00478) pptB 456749..457783 (+) 1035 WP_002988663.1 ABC transporter permease Regulator
  DQL25_RS02410 (NCTC8328_00479) ccrZ 457847..458638 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQL25_RS02415 (NCTC8328_00480) trmB 458638..459273 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL25_RS02425 (NCTC8328_00482) rimP 459532..460068 (+) 537 WP_172449953.1 ribosome maturation factor RimP -
  DQL25_RS02430 (NCTC8328_00483) nusA 460243..461400 (+) 1158 WP_111703156.1 transcription termination factor NusA -
  DQL25_RS02435 (NCTC8328_00484) rnpM 461416..461712 (+) 297 WP_111703157.1 RNase P modulator RnpM -
  DQL25_RS02440 (NCTC8328_00485) - 461705..462007 (+) 303 WP_111693350.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40241.47 Da        Isoelectric Point: 10.4168

>NTDB_id=1017670 DQL25_RS02405 WP_002988663.1 456749..457783(+) (pptB) [Streptococcus pyogenes strain NCTC8328]
MKALFLKRRQNFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1017670 DQL25_RS02405 WP_002988663.1 456749..457783(+) (pptB) [Streptococcus pyogenes strain NCTC8328]
ATGAAAGCATTATTTCTGAAACGCCGTCAAAACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTTTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATTCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427