Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABX026_RS04455 Genome accession   NZ_CP160075
Coordinates   1019771..1021255 (+) Length   494 a.a.
NCBI ID   WP_080690460.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1014771..1026255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX026_RS04440 (ABX026_14930) parC 1015880..1018198 (+) 2319 WP_371751231.1 DNA topoisomerase IV subunit A -
  ABX026_RS04445 (ABX026_14935) - 1018205..1019389 (+) 1185 WP_367425433.1 histidine kinase dimerization/phospho-acceptor domain-containing protein -
  ABX026_RS04450 (ABX026_14940) - 1019371..1019778 (+) 408 WP_371751232.1 sensor histidine kinase -
  ABX026_RS04455 (ABX026_14945) pilR 1019771..1021255 (+) 1485 WP_080690460.1 sigma-54 dependent transcriptional regulator Regulator
  ABX026_RS04460 (ABX026_14950) - 1021255..1022016 (+) 762 WP_279034238.1 class I SAM-dependent methyltransferase -
  ABX026_RS04465 (ABX026_15950) - 1022086..1023063 (+) 978 WP_279034236.1 hypothetical protein -
  ABX026_RS04470 (ABX026_14965) amgK 1023134..1024138 (-) 1005 WP_279118719.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 55559.33 Da        Isoelectric Point: 5.1258

>NTDB_id=1017662 ABX026_RS04455 WP_080690460.1 1019771..1021255(+) (pilR) [Snodgrassella alvi strain Amel10]
MNNNNQMDLEKPVLIIDDEADIRDLMELTLIKMGLSVKTAAGVAEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHN
LDIPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSENKQKNEDTSAMV
NEQQVRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFG
YKKGSFTGAESDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESG
QFRQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILHDETMTLTPEAKKALLQYSYPGNFRELENILERAIALSKNH
IIEVDDLQIHSYQLDNPRTESAENAGSNLSADSNEEIEDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGIS
FRSMRYRMERLGIV

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=1017662 ABX026_RS04455 WP_080690460.1 1019771..1021255(+) (pilR) [Snodgrassella alvi strain Amel10]
ATGAATAATAATAATCAGATGGACTTAGAAAAGCCGGTACTGATAATAGATGATGAAGCCGATATTCGTGATTTAATGGA
GTTAACCCTGATTAAAATGGGTTTGTCCGTAAAAACTGCCGCTGGCGTAGCTGAGGCAAAAAAGGCTTTACGTACGCATG
CTTTCTCCCTGGTGCTAACGGATATGCGTATGCCGGATGGCTCCGGGCTGGAGATTGTTGATTATATTACTGCCCATAAT
CTGGATATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCGCAGGCTGTACAGGCACTGAAAAATGGTGCTTTCGA
TTACTTACAAAAACCCATTACTCTGGCGCAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAA
CCGAAATAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAAATAAACAAAAAAATGAAGATACTTCCGCAATGGTT
AACGAACAGCAGGTACGTGAACGTTTACTGGGTAATTCTCCGTTAATAACAGAAGTACGTCAGTTGATCAGCAAGCTGGC
TAAAAGTAACGTGCCGGTATACATTGCCGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCGCGCAGTATTCATGAGCAGT
CAGAACGCAGAGACAAGGCATTTGTTGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGT
TATAAAAAAGGCAGTTTTACCGGAGCAGAATCAGATAGGGCCGGTTTTTTTCAGCATGCGGACGGCGGAACATTATTTCT
GGATGAAGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGCGCCATTCAGGAACGTGCTGTACGCCGGATTG
GCGAAATGGAAGAAAAGCAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTTGAATCAGGT
CAGTTTCGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTT
GCCGCAGTTAATTCGGGTTTTACTGCAACGAATTTTGCATGATGAAACCATGACATTAACACCGGAAGCAAAAAAAGCAC
TGTTGCAATACAGTTATCCAGGTAATTTCCGTGAATTGGAGAATATTCTGGAACGTGCTATCGCACTGTCGAAAAATCAT
ATTATTGAGGTAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAG
TAATCTATCCGCAGATAGTAATGAGGAAATTGAGGATTACCAGTTCGGAAAAACTCAGATACAGGATTATCTGGATGAAA
TAGAGAGAAAAATCCTGGAACAGGCTTTGGCGCAAACCCGATATAACCGAACACAGGCAGCCAAATTACTGGGTATCAGT
TTTCGTTCTATGCGTTACCGGATGGAACGGTTAGGGATTGTCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(451-490)

Response regulator receiver domain (Response_reg)

(13-122)

Sigma-54 interaction domain (Sigma54_activat)

(170-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.134

98.178

0.502
  pilR Acinetobacter baumannii strain A118

41.889

98.583

0.413

Multiple sequence alignment