Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABX024_RS09590 Genome accession   NZ_CP160074
Coordinates   2195753..2196559 (-) Length   268 a.a.
NCBI ID   WP_038648650.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel08     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2190753..2201559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX024_RS09570 (ABX024_10765) - 2191779..2192177 (+) 399 WP_279118663.1 DUF350 domain-containing protein -
  ABX024_RS09575 (ABX024_10760) - 2192210..2193253 (+) 1044 WP_370579490.1 SPFH domain-containing protein -
  ABX024_RS09580 (ABX024_10750) - 2193262..2195100 (+) 1839 WP_370579491.1 DUF4178 domain-containing protein -
  ABX024_RS09585 (ABX024_10745) speD 2195088..2195465 (+) 378 WP_279031874.1 adenosylmethionine decarboxylase -
  ABX024_RS09590 (ABX024_10740) comL 2195753..2196559 (-) 807 WP_038648650.1 outer membrane protein assembly factor BamD Machinery gene
  ABX024_RS09595 (ABX024_10735) rluD 2196558..2197688 (+) 1131 WP_370579492.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABX024_RS09600 (ABX024_10730) pgeF 2197698..2198489 (+) 792 WP_370579493.1 peptidoglycan editing factor PgeF -
  ABX024_RS09605 (ABX024_10725) - 2198810..2199337 (+) 528 WP_367416199.1 DUF6882 domain-containing protein -
  ABX024_RS09610 (ABX024_10720) - 2199739..2200470 (+) 732 WP_037392580.1 beta-ketoacyl synthase chain length factor -
  ABX024_RS09615 (ABX024_10715) - 2200512..2201237 (+) 726 WP_232335809.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ABX024_RS09620 (ABX024_10710) - 2201241..2201498 (+) 258 WP_037392583.1 phosphopantetheine-binding protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30962.90 Da        Isoelectric Point: 6.6493

>NTDB_id=1017650 ABX024_RS09590 WP_038648650.1 2195753..2196559(-) (comL) [Snodgrassella alvi strain Amel08]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQARFPYGSYAEQAQLDTAY
AYYKDDENDKALAAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVSKLAKQDWSDRDPKANREAYATFALLVQYFPQS
KYADDARAKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQFQNTPNVEEALAIMVSAYANLGEQKLSDDTKRV
LAQNFPNSPYLQKPWQDHNTIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1017650 ABX024_RS09590 WP_038648650.1 2195753..2196559(-) (comL) [Snodgrassella alvi strain Amel08]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTGTTACTGAGTGCCTGTGCCAGCACAAGTACGGTAGATAAAGATTC
CCAGATTACCCAGGACTGGTCAGTTCAGCGTCTGTACAATGAAGCACATGATGAGCTGATGCACCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGGCACGTTTCCCTTATGGTTCTTATGCCGAACAGGCTCAGCTGGATACGGCTTAT
GCTTATTATAAGGATGATGAGAACGATAAGGCACTGGCTGCTATTGAACAGTTCCAGCGTCTTTATCCGCAACATCCGAA
TATGGATTATGCGCTATATTTGAAAGCGCTGATTCAGCTCAATGAAGACAAATCATTTGTCAGCAAACTGGCAAAACAGG
ACTGGTCAGACCGTGATCCTAAAGCAAACCGTGAAGCTTATGCTACTTTTGCTCTGCTCGTACAGTATTTTCCACAGAGC
AAATATGCTGACGACGCCCGTGCCAAAATGCAGAAACTGCTGGATGCACTGGGTGGTAATGAACTCTCAGTGGCACGCTA
TTATATGAAGCGTGGTGCGTGGCTTGCTGCGGTAGGACGGGCACAGACTGTCATTTCTCAATTTCAGAATACGCCAAATG
TTGAAGAAGCTCTGGCAATCATGGTTTCAGCATATGCAAATCTGGGCGAGCAGAAACTCAGTGATGATACCAAACGTGTA
CTGGCACAGAATTTCCCGAACAGCCCGTATTTACAGAAACCATGGCAGGATCACAATACCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

67.041

99.627

0.668
  comL Neisseria gonorrhoeae MS11

66.667

99.627

0.664

Multiple sequence alignment