Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   DQL27_RS06890 Genome accession   NZ_LS483329
Coordinates   1341342..1342376 (-) Length   344 a.a.
NCBI ID   WP_031577431.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12058     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1336342..1347376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL27_RS06855 (NCTC12058_01365) - 1337118..1337420 (-) 303 WP_011285079.1 YlxQ-related RNA-binding protein -
  DQL27_RS06860 (NCTC12058_01366) rnpM 1337413..1337709 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  DQL27_RS06865 (NCTC12058_01367) nusA 1337725..1338882 (-) 1158 WP_002983485.1 transcription termination factor NusA -
  DQL27_RS06870 (NCTC12058_01368) rimP 1339057..1339593 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  DQL27_RS06880 (NCTC12058_01370) trmB 1339852..1340487 (-) 636 WP_111711459.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL27_RS06885 (NCTC12058_01371) ccrZ 1340487..1341278 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQL27_RS06890 (NCTC12058_01372) pptB 1341342..1342376 (-) 1035 WP_031577431.1 ABC transporter permease Regulator
  DQL27_RS06895 (NCTC12058_01373) pptA 1342379..1343104 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  DQL27_RS06900 (NCTC12058_01374) - 1343176..1343595 (+) 420 WP_002983376.1 HIT family protein -
  DQL27_RS06905 (NCTC12058_01375) - 1343592..1343948 (+) 357 WP_031488470.1 hypothetical protein -
  DQL27_RS06910 (NCTC12058_01376) brpA 1344059..1345342 (-) 1284 WP_031488469.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL27_RS06915 (NCTC12058_01377) - 1345351..1345875 (-) 525 WP_031488468.1 GNAT family N-acetyltransferase -
  DQL27_RS06920 (NCTC12058_01378) tsaE 1345850..1346311 (-) 462 WP_009880751.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40256.54 Da        Isoelectric Point: 10.3713

>NTDB_id=1017612 DQL27_RS06890 WP_031577431.1 1341342..1342376(-) (pptB) [Streptococcus pyogenes strain NCTC12058]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISIKVKERAYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNMLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1017612 DQL27_RS06890 WP_031577431.1 1341342..1342376(-) (pptB) [Streptococcus pyogenes strain NCTC12058]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTATAAAAGTGAAAGAAAGAGCTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATATGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

43.023

100

0.43
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43