Detailed information NTG1017604

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABX025_RS00375
• Genome accession: NZ_CP160073
• Coordinates: 76939..78423 (+)
• Length: 494 a.a.
• NCBI ID: WP_371751528.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel09
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 71939..83423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX025_RS00365 (ABX025_04995)	parC	73047..75365 (+)	2319	WP_371751529.1	DNA topoisomerase IV subunit A	-
ABX025_RS00370 (ABX025_14535)	-	75372..76946 (+)	1575	WP_084552068.1	ATP-binding protein	-
ABX025_RS00375 (ABX025_05020)	pilR	76939..78423 (+)	1485	WP_371751528.1	sigma-54-dependent transcriptional regulator	Regulator
ABX025_RS00380 (ABX025_05025)	-	78423..79184 (+)	762	WP_371751527.1	class I SAM-dependent methyltransferase	-
ABX025_RS00385 (ABX025_05030)	-	79255..80232 (+)	978	WP_371751526.1	hypothetical protein	-
ABX025_RS00390 (ABX025_05035)	amgK	80303..81307 (-)	1005	WP_371751525.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-

Sequence

Protein

• Length: 494 a.a.
• Molecular weight: 55557.35 Da
• Isoelectric Point: 5.1258

>NTDB_id=1017604 ABX025_RS00375 WP_371751528.1 76939..78423(+) (pilR) [Snodgrassella alvi strain Amel09]
MNNNNQMDLEKPVLIIDDEADIRDLMELTLIKMGLSVKTAAGVAEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHN
LDIPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSENKQKNEDTSVMV
NEQQVRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFG
YKKGSFTGAESDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESG
QFRQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILHDETMTLAPEAKKALLQYSYPGNFRELENILERAIALSKNH
IIEVDDLQIHSYQLDNPRTESAENAGSNLSADSNEEIEDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGIS
FRSMRYRMERLGIV

Nucleotide

• Length: 1485 bp

>NTDB_id=1017604 ABX025_RS00375 WP_371751528.1 76939..78423(+) (pilR) [Snodgrassella alvi strain Amel09]
ATGAATAATAATAATCAGATGGACTTAGAAAAGCCGGTACTGATAATAGATGATGAAGCCGATATTCGTGATTTAATGGA
GTTAACCCTGATTAAAATGGGTTTGTCCGTAAAAACTGCCGCTGGTGTAGCTGAGGCAAAAAAGGCTTTACGTACGCATG
CTTTCTCTCTGGTGCTAACGGATATGCGTATGCCGGATGGCTCCGGGCTGGAGATTGTTGATTATATTACTGCCCATAAT
CTGGATATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCGCAGGCTGTACAGGCACTGAAAAATGGTGCTTTCGA
TTACTTACAAAAACCCATTACTCTGGCGCAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAA
CCGAAATAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAAATAAACAAAAAAATGAAGATACTTCCGTAATGGTT
AACGAACAGCAGGTACGTGAACGTTTACTGGGTAATTCTCCGTTAATAACAGAAGTACGTCAGTTGATCAGCAAGCTGGC
TAAAAGTAACGTGCCGGTATACATTGCCGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCGCGCAGTATTCATGAACAGT
CAGAACGCAGAGACAAGGCATTTGTTGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGT
TATAAAAAAGGCAGTTTTACCGGAGCAGAATCAGATAGGGCTGGTTTTTTTCAGCATGCGGACGGCGGAACATTATTTCT
GGATGAAGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGGGCCATTCAGGAACGTGCTGTACGCCGGATTG
GCGAAATGGAAGAAAAGCAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTTGAATCAGGT
CAGTTTCGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTT
GCCGCAGTTAATTCGGGTTTTACTGCAACGAATTTTGCATGATGAAACCATGACATTAGCACCGGAAGCAAAAAAAGCAC
TGTTGCAATACAGTTATCCCGGTAATTTCCGTGAATTGGAGAATATTCTGGAACGTGCTATTGCACTGTCGAAAAATCAT
ATTATTGAGGTAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAG
TAATCTATCCGCAGATAGTAATGAGGAAATTGAGGATTACCAGTTCGGAAAAACTCAGATACAGGATTATCTGGATGAAA
TAGAGAGAAAAATCCTGGAACAGGCTTTAGCGCAAACCCGATATAACCGAACACAGGCCGCCAAATTACTGGGTATCAGT
TTTCGTTCTATGCGTTACCGGATGGAACGGTTAGGGATTGTCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (451-490)

• Response regulator receiver domain (Response_reg) (13-122)

• Sigma-54 interaction domain (Sigma54_activat) (170-335)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	50.928	98.178	0.5
pilR	Acinetobacter baumannii strain A118	41.684	98.583	0.411