Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABX022_RS05685 Genome accession   NZ_CP160072
Coordinates   1280769..1281575 (-) Length   268 a.a.
NCBI ID   WP_037391728.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel07     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1275769..1286575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX022_RS05665 (ABX022_00555) - 1276796..1277194 (+) 399 WP_110413902.1 DUF350 domain-containing protein -
  ABX022_RS05670 (ABX022_00550) - 1277226..1278269 (+) 1044 WP_370570182.1 SPFH domain-containing protein -
  ABX022_RS05675 (ABX022_00545) - 1278278..1280116 (+) 1839 WP_367482821.1 DUF4178 domain-containing protein -
  ABX022_RS05680 (ABX022_00540) speD 1280104..1280481 (+) 378 WP_084551310.1 adenosylmethionine decarboxylase -
  ABX022_RS05685 (ABX022_00535) comL 1280769..1281575 (-) 807 WP_037391728.1 outer membrane protein assembly factor BamD Machinery gene
  ABX022_RS05690 (ABX022_00530) rluD 1281574..1282704 (+) 1131 WP_367482817.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABX022_RS05695 (ABX022_00525) pgeF 1282714..1283505 (+) 792 WP_174829804.1 peptidoglycan editing factor PgeF -
  ABX022_RS05700 (ABX022_00520) - 1283826..1284353 (+) 528 WP_367482815.1 DUF6882 domain-containing protein -
  ABX022_RS05705 (ABX022_00510) - 1284755..1285486 (+) 732 WP_037392580.1 beta-ketoacyl synthase chain length factor -
  ABX022_RS05710 (ABX022_00505) - 1285528..1286253 (+) 726 WP_232335809.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ABX022_RS05715 (ABX022_00500) - 1286257..1286514 (+) 258 WP_037392583.1 phosphopantetheine-binding protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30990.95 Da        Isoelectric Point: 6.6493

>NTDB_id=1017592 ABX022_RS05685 WP_037391728.1 1280769..1281575(-) (comL) [Snodgrassella alvi strain Amel07]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQARFPYGSYAEQAQLDTAY
AYYKDDENDKALVAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVSKLAKQDWSDRDPKANREAYATFALLVQYFPQS
KYADDARAKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQFQNTPNVEEALAIMVSAYANLGEQKLSDDTKRV
LAQNFPNSPYLQKPWQDHNTIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1017592 ABX022_RS05685 WP_037391728.1 1280769..1281575(-) (comL) [Snodgrassella alvi strain Amel07]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTGTTACTGAGTGCCTGTGCCAGCACAAGTACGGTAGATAAAGATTC
CCAGATTACCCAGGACTGGTCAGTTCAGCGTCTGTACAATGAAGCACATGATGAGCTGATGCACCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGGCACGTTTTCCTTATGGTTCTTATGCCGAACAGGCTCAGCTGGATACGGCTTAT
GCTTATTATAAGGATGATGAAAACGATAAGGCACTGGTTGCTATTGAACAGTTCCAGCGTCTTTATCCGCAACATCCGAA
TATGGATTATGCGCTATATTTGAAAGCGCTGATTCAGCTCAATGAAGACAAATCATTTGTCAGCAAACTGGCAAAACAGG
ACTGGTCTGACCGCGATCCTAAAGCAAACCGTGAAGCTTATGCTACTTTTGCTCTGCTCGTACAGTATTTTCCACAGAGC
AAATATGCTGACGACGCCCGTGCCAAAATGCAGAAACTGCTGGATGCACTGGGTGGTAATGAACTCTCCGTGGCACGGTA
TTATATGAAGCGCGGTGCGTGGCTTGCTGCGGTAGGACGGGCACAGACTGTAATTTCTCAATTTCAGAATACGCCAAATG
TTGAAGAAGCTCTGGCAATCATGGTTTCAGCATATGCAAATCTGGGCGAGCAGAAACTCAGTGATGATACCAAACGTGTA
CTGGCACAGAATTTCCCGAACAGCCCGTATTTACAGAAACCATGGCAGGATCACAATACCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

66.667

99.627

0.664
  comL Neisseria gonorrhoeae MS11

66.292

99.627

0.66

Multiple sequence alignment