Detailed information NTG1017578

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABX016_RS10340
• Genome accession: NZ_CP160071
• Coordinates: 2342474..2342935 (-)
• Length: 153 a.a.
• NCBI ID: WP_367415554.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2337474..2347935

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX016_RS10330 (ABX016_07420)	waaA	2339486..2340775 (+)	1290	WP_370581035.1	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	-
ABX016_RS10335 (ABX016_18460)	-	2340960..2342234 (-)	1275	WP_370581036.1	sulfatase-like hydrolase/transferase	-
ABX016_RS10340 (ABX016_07410)	pilA	2342474..2342935 (-)	462	WP_367415554.1	pilin	Machinery gene
ABX016_RS10345 (ABX016_07405)	-	2343085..2343501 (-)	417	WP_370581037.1	pilin	-
ABX016_RS10350 (ABX016_07400)	-	2343703..2344152 (-)	450	WP_084585931.1	pilin	-
ABX016_RS10355 (ABX016_07395)	-	2344434..2345237 (-)	804	WP_370581038.1	hypothetical protein	-
ABX016_RS10360 (ABX016_07390)	-	2345607..2346809 (+)	1203	WP_370581039.1	TonB-dependent receptor plug domain-containing protein	-
ABX016_RS10365 (ABX016_07380)	-	2346752..2347345 (+)	594	WP_172397424.1	TonB-dependent receptor domain-containing protein	-
ABX016_RS10370 (ABX016_18465)	-	2347317..2347826 (+)	510	WP_172397425.1	TonB-dependent receptor domain-containing protein	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 15853.29 Da
• Isoelectric Point: 9.3941

>NTDB_id=1017578 ABX016_RS10340 WP_367415554.1 2342474..2342935(-) (pilA) [Snodgrassella alvi strain Amel06]
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIIDNLQNSNCMSGPNNSLDTAIDQQTG
KYGVAQIGGTAVTGSISANGVTGCTITYTVNGTKVSSSIATKTLILDVLKNGSLKKNTASTMPDKYIPKAFTI

Nucleotide

• Length: 462 bp

>NTDB_id=1017578 ABX016_RS10340 WP_367415554.1 2342474..2342935(-) (pilA) [Snodgrassella alvi strain Amel06]
ATGAAAGCATTCCAAAAAGGTTTTACTTTAATTGAATTGATGATTGTTATTGCAATTATCGGTATCCTTGCTGCAATTGC
CGTACCTGCTTACTCTGATTATATTGCCCGTTCTCAGGCTTCAGAAGCTTCCAGTCTGGCAGCTGGTCTGAAAACTCAGA
TTATTGATAATCTGCAGAATAGTAATTGTATGTCAGGTCCCAATAATTCACTTGATACCGCCATTGACCAACAAACTGGT
AAATACGGTGTAGCACAAATCGGCGGTACTGCTGTTACCGGCAGTATTTCTGCTAACGGTGTAACAGGCTGTACAATTAC
ATATACAGTAAACGGTACCAAAGTATCTTCTTCTATTGCTACTAAGACCTTAATATTGGATGTATTAAAAAATGGTTCAC
TGAAGAAAAATACTGCTTCAACTATGCCTGATAAATATATACCTAAAGCATTCACAATCTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-27)

• Pilin (bacterial filament) (Pilin) (36-150)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Acinetobacter nosocomialis M2	50.34	96.078	0.484
pilE	Neisseria gonorrhoeae MS11	42.143	91.503	0.386