Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABX014_RS08390 Genome accession   NZ_CP160070
Coordinates   1725737..1726543 (-) Length   268 a.a.
NCBI ID   WP_174832940.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel05     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1720737..1731543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX014_RS08370 (ABX014_07555) - 1720849..1721892 (+) 1044 WP_370577605.1 SPFH domain-containing protein -
  ABX014_RS08375 (ABX014_22155) - 1721901..1723739 (+) 1839 WP_370577606.1 DUF4178 domain-containing protein -
  ABX014_RS08380 (ABX014_07535) speD 1723727..1724104 (+) 378 WP_174832938.1 adenosylmethionine decarboxylase -
  ABX014_RS08385 (ABX014_22160) - 1724469..1725110 (-) 642 WP_174832939.1 hypothetical protein -
  ABX014_RS08390 (ABX014_07520) comL 1725737..1726543 (-) 807 WP_174832940.1 outer membrane protein assembly factor BamD Machinery gene
  ABX014_RS08395 (ABX014_07515) rluD 1726542..1727672 (+) 1131 WP_370577608.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABX014_RS08400 (ABX014_07505) pgeF 1727682..1728473 (+) 792 WP_370577609.1 peptidoglycan editing factor PgeF -
  ABX014_RS08405 (ABX014_07500) - 1728799..1729326 (+) 528 WP_303830994.1 DUF6882 domain-containing protein -
  ABX014_RS08410 (ABX014_07495) - 1729647..1731437 (+) 1791 WP_370577610.1 2-isopropylmalate synthase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31034.97 Da        Isoelectric Point: 6.9791

>NTDB_id=1017542 ABX014_RS08390 WP_174832940.1 1725737..1726543(-) (comL) [Snodgrassella alvi strain Amel05]
MKNLFLAVGLGLLLSACASKSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQARFPYGSYAEQAQLDTAY
AYYKDDENDKALVAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVSKLAKQDWSDRDPKANREAYATFAQLVQYFPQS
KYAADARDKMQKLLDALSGNELAVARYYMKRGAWLAAAGRAQTVISQYQNTPNVEEALAIMISAYTNLGEQKLSDDTKRV
LAQNFPNSPYLQKPWQDHNAIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1017542 ABX014_RS08390 WP_174832940.1 1725737..1726543(-) (comL) [Snodgrassella alvi strain Amel05]
ATGAAAAATTTGTTTTTGGCGGTGGGCTTAGGCCTGTTACTGAGTGCCTGTGCCAGCAAAAGTACTGTAGATAAAGATTC
CCAGATTACCCAGGACTGGTCAGTTCAGCGTCTGTACAATGAAGCACATGATGAGCTGATGCACCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGGCGCGTTTCCCATATGGTTCTTATGCTGAACAGGCACAGCTGGATACGGCTTAT
GCTTATTATAAGGATGATGAGAACGACAAAGCACTGGTTGCAATTGAGCAGTTCCAGCGTCTGTACCCGCAACATCCCAA
TATGGATTATGCACTATATTTAAAAGCACTGATTCAGCTCAATGAAGATAAATCCTTTGTCAGCAAACTGGCAAAACAGG
ACTGGTCTGACCGTGATCCTAAAGCGAACCGTGAAGCTTATGCCACTTTTGCTCAGCTCGTACAATATTTTCCACAGAGC
AAATATGCTGCCGACGCCCGTGATAAAATGCAGAAACTGCTGGATGCTCTGAGCGGGAACGAACTAGCGGTTGCACGTTA
CTATATGAAGCGCGGTGCATGGCTTGCCGCTGCCGGACGGGCACAGACTGTAATTTCTCAATACCAGAATACGCCAAATG
TAGAAGAAGCTCTGGCAATCATGATTTCTGCATATACCAATCTGGGAGAACAGAAGCTTAGCGACGATACCAAACGTGTA
CTGGCGCAAAATTTTCCGAATAGCCCGTATTTACAAAAACCATGGCAGGATCATAATGCCATTCCATGGTGGCGTTACTG
GAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

66.667

99.627

0.664
  comL Neisseria gonorrhoeae MS11

66.292

99.627

0.66

Multiple sequence alignment