Detailed information NTG1017531

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABX014_RS02115
• Genome accession: NZ_CP160070
• Coordinates: 454219..455703 (-)
• Length: 494 a.a.
• NCBI ID: WP_367436489.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel05
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 449219..460703

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX014_RS02100 (ABX014_16685)	amgK	451336..452340 (+)	1005	WP_037475749.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
ABX014_RS02105 (ABX014_20085)	-	452411..453388 (-)	978	WP_037475746.1	hypothetical protein	-
ABX014_RS02110 (ABX014_16665)	-	453458..454222 (-)	765	WP_370578212.1	class I SAM-dependent methyltransferase	-
ABX014_RS02115 (ABX014_16660)	pilR	454219..455703 (-)	1485	WP_367436489.1	sigma-54 dependent transcriptional regulator	Regulator
ABX014_RS02120 (ABX014_20090)	-	455696..457270 (-)	1575	WP_174833853.1	nitrogen regulation protein NR(II)	-
ABX014_RS02125 (ABX014_16640)	parC	457277..459595 (-)	2319	WP_370578213.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 494 a.a.
• Molecular weight: 55540.34 Da
• Isoelectric Point: 5.7578

>NTDB_id=1017531 ABX014_RS02115 WP_367436489.1 454219..455703(-) (pilR) [Snodgrassella alvi strain Amel05]
MNNNNQIDLKKPVLVIDDEADIRDLMELTLIKMGLSVKTASGVTEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHN
LDIPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSENKQKNEDTSATV
NEQQVRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFG
YKKGSFTGADTDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESG
QFRQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILHDETMTLTPEAKKALLQYSYPGNFRELENILERAIALSKNH
IIDIDDLQIHSYQLDNPRTESAENAGSNLSANSNEEIKDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGIS
FRSMRYRMERLGIV

Nucleotide

• Length: 1485 bp

>NTDB_id=1017531 ABX014_RS02115 WP_367436489.1 454219..455703(-) (pilR) [Snodgrassella alvi strain Amel05]
ATGAATAATAATAATCAAATAGATTTAAAGAAGCCGGTACTGGTGATAGATGATGAAGCCGATATACGTGATTTAATGGA
GTTAACCCTGATTAAAATGGGTTTATCTGTAAAAACTGCTTCAGGCGTGACTGAGGCAAAAAAAGCTTTACGTACGCATG
CTTTCTCACTGGTGCTGACGGATATGCGTATGCCAGATGGCTCTGGGCTGGAGATTGTTGATTATATCACTGCTCATAAT
CTGGATATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCACAGGCTGTACAGGCACTGAAAAATGGTGCTTTCGA
TTACTTACAAAAACCTATTACACTGGCGCAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAA
CCGAAATAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAAATAAACAAAAAAATGAAGATACTTCCGCAACGGTT
AATGAACAGCAGGTACGTGAACGTTTACTGGGTAACTCTCCGTTAATAACTGAAGTACGTCAGTTGATCAGCAAGCTGGC
TAAAAGTAACGTGCCGGTATACATCGCTGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCACGCAGTATTCATGAACAGT
CAGAACGCAGAGACAAGGCATTTGTCGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGT
TATAAAAAAGGCAGTTTTACCGGAGCCGATACAGATAGAGCAGGTTTCTTTCAACATGCGGACGGCGGTACATTATTTCT
GGATGAGGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGCGCCATTCAGGAACGTGCTGTACGCCGGATTG
GCGAAATGGAAGAAAAGCAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTCGAATCAGGT
CAGTTTCGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTT
GCCGCAGTTAATTCGGGTTTTACTGCAACGAATTTTGCATGATGAAACCATGACATTAACACCGGAAGCAAAAAAAGCAC
TGTTGCAATACAGTTATCCCGGTAATTTCCGTGAATTAGAGAATATTCTGGAACGTGCTATTGCACTGTCGAAAAATCAT
ATTATTGATATAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAG
TAATCTATCCGCAAATAGTAATGAGGAAATTAAGGATTACCAGTTCGGAAAAACTCAGATACAAGATTATCTGGATGAAA
TAGAGAGAAAAATCCTGGAACAGGCTTTGGCGCAAACCCGATATAACAGAACACAGGCCGCCAAATTACTGGGTATCAGT
TTTCGTTCTATGCGTTACCGGATGGAACGGTTAGGGATTGTATGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (170-335)

• Bacterial regulatory protein, Fis family (HTH_8) (451-490)

• Response regulator receiver domain (Response_reg) (13-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	50.511	98.988	0.5
pilR	Acinetobacter baumannii strain A118	42.505	98.583	0.419