Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   DQL07_RS06945 Genome accession   NZ_LS483327
Coordinates   1343296..1344330 (-) Length   344 a.a.
NCBI ID   WP_002994331.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12069     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338296..1349330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL07_RS06910 (NCTC12069_01362) - 1339072..1339374 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  DQL07_RS06915 (NCTC12069_01363) rnpM 1339367..1339663 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  DQL07_RS06920 (NCTC12069_01364) nusA 1339679..1340836 (-) 1158 WP_002994325.1 transcription termination factor NusA -
  DQL07_RS06925 (NCTC12069_01365) rimP 1341011..1341547 (-) 537 WP_172451336.1 ribosome maturation factor RimP -
  DQL07_RS06935 (NCTC12069_01367) trmB 1341806..1342441 (-) 636 WP_011184863.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL07_RS06940 (NCTC12069_01368) ccrZ 1342441..1343232 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQL07_RS06945 (NCTC12069_01369) pptB 1343296..1344330 (-) 1035 WP_002994331.1 ABC transporter permease Regulator
  DQL07_RS06950 (NCTC12069_01370) pptA 1344333..1345058 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  DQL07_RS06955 (NCTC12069_01371) - 1345130..1345549 (+) 420 WP_002983376.1 HIT family protein -
  DQL07_RS06960 (NCTC12069_01372) - 1345546..1345902 (+) 357 WP_002988657.1 hypothetical protein -
  DQL07_RS06965 (NCTC12069_01373) brpA 1346013..1347296 (-) 1284 WP_111702912.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL07_RS06970 (NCTC12069_01374) - 1347305..1347829 (-) 525 WP_111702913.1 GNAT family N-acetyltransferase -
  DQL07_RS06975 (NCTC12069_01375) tsaE 1347804..1348265 (-) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40242.46 Da        Isoelectric Point: 10.3713

>NTDB_id=1017518 DQL07_RS06945 WP_002994331.1 1343296..1344330(-) (pptB) [Streptococcus pyogenes strain NCTC12069]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1017518 DQL07_RS06945 WP_002994331.1 1343296..1344330(-) (pptB) [Streptococcus pyogenes strain NCTC12069]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTATGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTTTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATTCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427