Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DQL07_RS06500 Genome accession   NZ_LS483327
Coordinates   1254646..1255287 (-) Length   213 a.a.
NCBI ID   WP_002983671.1    Uniprot ID   A0A0H2UW05
Organism   Streptococcus pyogenes strain NCTC12069     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1249646..1260287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL07_RS06475 (NCTC12069_01276) comFA/cflA 1249733..1251058 (-) 1326 WP_002988971.1 DEAD/DEAH box helicase Machinery gene
  DQL07_RS06480 (NCTC12069_01277) - 1251113..1251745 (+) 633 WP_002988970.1 YigZ family protein -
  DQL07_RS06485 (NCTC12069_01278) cysK 1251873..1252814 (+) 942 WP_002991877.1 cysteine synthase A -
  DQL07_RS06490 (NCTC12069_01279) - 1252832..1253209 (-) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  DQL07_RS06495 (NCTC12069_01280) - 1253209..1254609 (-) 1401 WP_011054832.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQL07_RS06500 (NCTC12069_01281) vraR 1254646..1255287 (-) 642 WP_002983671.1 response regulator transcription factor Regulator
  DQL07_RS06505 (NCTC12069_01282) - 1255280..1256284 (-) 1005 WP_002991890.1 sensor histidine kinase -
  DQL07_RS06510 (NCTC12069_01283) liaF 1256281..1256973 (-) 693 WP_011054833.1 cell wall-active antibiotics response protein LiaF -
  DQL07_RS06515 (NCTC12069_01284) pknB 1257096..1258994 (-) 1899 WP_011018054.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  DQL07_RS06520 (NCTC12069_01285) - 1258991..1259731 (-) 741 WP_002983660.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23751.43 Da        Isoelectric Point: 5.1641

>NTDB_id=1017513 DQL07_RS06500 WP_002983671.1 1254646..1255287(-) (vraR) [Streptococcus pyogenes strain NCTC12069]
MSKIKVILVDDHEMVRMGLKSFLNLQADIDVVGEASNGREGVDLALALKPDVLVMDLVMPELGGVEATLEVLKKWKEAKV
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLA
KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1017513 DQL07_RS06500 WP_002983671.1 1254646..1255287(-) (vraR) [Streptococcus pyogenes strain NCTC12069]
ATGAGTAAGATAAAAGTGATATTGGTCGATGATCATGAAATGGTCCGCATGGGACTCAAGAGTTTTTTGAATTTACAAGC
TGATATTGATGTCGTTGGTGAGGCCTCTAATGGACGTGAAGGGGTTGATTTGGCATTGGCTTTGAAGCCAGATGTTTTGG
TTATGGATCTAGTGATGCCAGAGTTAGGCGGTGTTGAGGCAACTTTAGAAGTCCTAAAAAAATGGAAAGAGGCTAAGGTA
CTTGTGTTAACTTCCTATCTAGATAATGAAAAGATATACCCTGTCATTGATGCAGGAGCGAAGGGTTATATGTTAAAAAC
ATCGAGTGCGGCTGAAATTTTAAATGCCATTCGCAAGGTTTCAAAGGGAGAGTTAGCTATTGAAACAGAAGTTGACAAAA
AAATTAAGGCGCATGATCAACACCCTGACTTGCATGAGGAACTAACAGCGCGTGAGTATGATATTTTACACCTTTTAGCT
AAAGGGTATGATAATCAGACCATTGCTGATGAACTCTTTATTTCCTTAAAAACCGTCAAAACACATGTGTCCAATATTCT
AGCCAAGTTAGAAGTTGATGACCGAACCCAAGCGGTTGTCTATGCTTTTCGACACCATTTAGTCCCCCAAGACGATAATT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UW05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.913

96.714

0.512
  degU Bacillus subtilis subsp. subtilis str. 168

36.283

100

0.385