Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AB0T70_RS01565 Genome accession   NZ_CP160032
Coordinates   337087..337905 (+) Length   272 a.a.
NCBI ID   WP_002068685.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB44-AUFP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332087..342905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0T70_RS01530 (AB0T70_01530) - 332669..332799 (-) 131 Protein_292 hypothetical protein -
  AB0T70_RS01535 (AB0T70_01535) rpoZ 332838..333116 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB0T70_RS01540 (AB0T70_01540) gmk 333189..333818 (-) 630 WP_000015937.1 guanylate kinase -
  AB0T70_RS01545 (AB0T70_01545) ispH 333941..334891 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB0T70_RS01550 (AB0T70_01550) fimU 335061..335534 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  AB0T70_RS01555 (AB0T70_01555) pilV 335528..336088 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AB0T70_RS01560 (AB0T70_01560) pilW 336089..337090 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  AB0T70_RS01565 (AB0T70_01565) pilX 337087..337905 (+) 819 WP_002068685.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB0T70_RS01570 (AB0T70_01570) pilY1 337917..341771 (+) 3855 WP_002068954.1 PilC/PilY family type IV pilus protein Machinery gene
  AB0T70_RS01575 (AB0T70_01575) pilY2 341784..342266 (+) 483 WP_002068702.1 type IV pilin protein Machinery gene
  AB0T70_RS01580 (AB0T70_01580) pilE 342263..342688 (+) 426 WP_002068758.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28857.71 Da        Isoelectric Point: 6.2291

>NTDB_id=1017180 AB0T70_RS01565 WP_002068685.1 337087..337905(+) (pilX) [Acinetobacter baumannii strain AB44-AUFP]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1017180 AB0T70_RS01565 WP_002068685.1 337087..337905(+) (pilX) [Acinetobacter baumannii strain AB44-AUFP]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCAATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.529

100

0.985

Multiple sequence alignment