Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABXO38_RS01830 Genome accession   NZ_CP160024
Coordinates   344177..344863 (+) Length   228 a.a.
NCBI ID   WP_001793467.1    Uniprot ID   A0A641AAY3
Organism   Staphylococcus aureus strain 23EV612     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339177..349863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXO38_RS01795 (ABXO38_01795) yqeH 339704..340804 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  ABXO38_RS01800 (ABXO38_01800) aroE 340818..341624 (+) 807 WP_000666748.1 shikimate dehydrogenase -
  ABXO38_RS01805 (ABXO38_01805) yhbY 341628..341918 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  ABXO38_RS01810 (ABXO38_01810) nadD 341921..342490 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ABXO38_RS01815 (ABXO38_01815) yqeK 342480..343064 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ABXO38_RS01820 (ABXO38_01820) rsfS 343065..343418 (+) 354 WP_001088022.1 ribosome silencing factor -
  ABXO38_RS01825 (ABXO38_01825) - 343421..344137 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  ABXO38_RS01830 (ABXO38_01830) comEA 344177..344863 (+) 687 WP_001793467.1 ComEA family DNA-binding protein Machinery gene
  ABXO38_RS01835 (ABXO38_01835) - 344955..345416 (+) 462 WP_000439693.1 ComE operon protein 2 -
  ABXO38_RS01840 (ABXO38_01840) comEC 345421..347622 (+) 2202 WP_001566670.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABXO38_RS01845 (ABXO38_01845) holA 347679..348653 (+) 975 WP_001282568.1 DNA polymerase III subunit delta -
  ABXO38_RS01850 (ABXO38_01850) rpsT 348698..348949 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=1017090 ABXO38_RS01830 WP_001793467.1 344177..344863(+) (comEA) [Staphylococcus aureus strain 23EV612]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1017090 ABXO38_RS01830 WP_001793467.1 344177..344863(+) (comEA) [Staphylococcus aureus strain 23EV612]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641AAY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

100

100

1
  comEA Staphylococcus aureus N315

97.368

100

0.974

Multiple sequence alignment