Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABWI26_RS04170 Genome accession   NZ_CP159983
Coordinates   871212..872942 (+) Length   576 a.a.
NCBI ID   WP_119325631.1    Uniprot ID   -
Organism   Companilactobacillus musae strain zy 130     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 866212..877942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWI26_RS04150 - 867506..868189 (+) 684 WP_119325909.1 GTP pyrophosphokinase family protein -
  ABWI26_RS04155 - 868264..868794 (-) 531 WP_119325628.1 GNAT family N-acetyltransferase -
  ABWI26_RS04160 - 868940..869404 (+) 465 WP_119325629.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABWI26_RS04165 rcrP 869452..871215 (+) 1764 WP_119325630.1 ABC transporter ATP-binding protein Regulator
  ABWI26_RS04170 rcrQ 871212..872942 (+) 1731 WP_119325631.1 ABC transporter ATP-binding protein Regulator
  ABWI26_RS04175 - 873236..874885 (+) 1650 WP_119325632.1 alpha,alpha-phosphotrehalase -
  ABWI26_RS04180 - 874959..875690 (+) 732 WP_119325633.1 GntR family transcriptional regulator -
  ABWI26_RS04185 - 875908..876630 (-) 723 WP_119325634.1 UTRA domain-containing protein -
  ABWI26_RS04190 - 876803..877882 (-) 1080 WP_119325635.1 GDSL-type esterase/lipase family protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64237.35 Da        Isoelectric Point: 6.0224

>NTDB_id=1016981 ABWI26_RS04170 WP_119325631.1 871212..872942(+) (rcrQ) [Companilactobacillus musae strain zy 130]
MKILKGIKKYGSEYLIPLIIAFIFAMAGSIFTIIGPSKLSKITDLISKGLFGAIDLTKVMQIVWILAIIYVAAAVLSYGQ
GFIMATITQKFTQKLRTKITEKINNLPLQYFDTHNEGDTLSRVTNDLDTVGQSLNQSLGILVSAITLLIGSIVMMFTTNV
TLGFTAVLSVLVGFVLTIVLMSRSQKYFYNQQNKLADVSGYIEEIYSGHDVVNTYNYTDEAKSTFDQMNNDLQDNVWKSQ
FLSGIMQPLMNFIGNFGYVMVSVIGAILVLNGHITIGVIVAFMIYVRLFTQPLSQITQAFSSLQLAQAAMKRVFDFLAED
EVVEDKNSYQTISGTKGNVEFDNIEFGYLLGQKIIKDFSVKAKAGQKIAIVGPTGSGKTTTVNLLMRFYDMNSGKIKIDG
VDITDMKRSEVRNQFDMVLQEAWLFDDTVRNNLVYNQKNVSDEQIKDATKAVGLDHFIETLPKGYDTVLDDSVSLSVGQK
QLLTIARALIRNAPMLILDEATSSVDTRTEEQIQKAMDILMKNRTSFVIAHRLSTIKNADLILVVKDGEIIERGTHDELM
SENGFYANMYNSQFTK

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1016981 ABWI26_RS04170 WP_119325631.1 871212..872942(+) (rcrQ) [Companilactobacillus musae strain zy 130]
ATGAAAATACTTAAAGGTATCAAGAAATATGGTTCAGAATATCTAATACCATTAATAATTGCTTTCATTTTTGCAATGGC
AGGTAGTATTTTTACTATTATCGGACCTAGTAAATTAAGCAAGATCACTGATTTGATCAGTAAGGGATTGTTTGGTGCAA
TTGATTTAACTAAGGTTATGCAGATTGTTTGGATCTTGGCAATTATCTATGTTGCTGCGGCAGTTTTGTCTTATGGACAA
GGCTTCATCATGGCAACAATTACTCAAAAATTTACTCAAAAATTACGTACGAAAATTACAGAAAAAATCAATAATTTACC
ATTACAATATTTTGATACTCATAACGAAGGTGACACGTTGAGTCGTGTTACTAATGACTTGGATACTGTCGGTCAATCAT
TGAATCAAAGTTTGGGAATATTAGTATCAGCGATTACTTTATTGATTGGTAGTATCGTTATGATGTTTACAACAAATGTG
ACATTAGGATTTACAGCAGTTTTATCGGTGTTGGTCGGATTTGTTTTAACGATTGTTTTAATGTCGAGATCACAAAAATA
CTTTTATAATCAACAGAATAAGTTAGCAGATGTTTCTGGCTACATTGAAGAAATTTATAGTGGTCATGATGTTGTTAATA
CTTATAATTACACTGATGAGGCTAAATCAACGTTTGATCAAATGAATAATGATTTGCAAGATAATGTATGGAAGTCACAG
TTCTTATCAGGAATCATGCAGCCATTGATGAACTTTATCGGTAATTTTGGTTACGTAATGGTCAGTGTGATAGGTGCTAT
CTTAGTTTTAAATGGTCATATTACTATTGGTGTGATCGTGGCTTTCATGATTTATGTACGTTTATTTACACAACCTTTAT
CACAAATTACCCAGGCCTTCTCAAGTTTGCAATTAGCTCAGGCAGCTATGAAACGAGTATTTGATTTCTTAGCTGAAGAT
GAAGTTGTTGAAGATAAAAATAGTTATCAAACTATTTCTGGTACAAAAGGTAATGTTGAATTTGATAATATCGAATTTGG
TTATTTGCTAGGTCAAAAGATCATCAAAGACTTTTCAGTTAAAGCTAAGGCAGGTCAGAAGATTGCTATTGTCGGACCTA
CTGGATCTGGTAAAACAACAACTGTTAATTTATTGATGAGATTCTATGATATGAATAGCGGTAAAATCAAAATTGACGGT
GTCGATATAACTGATATGAAGCGCTCAGAAGTTAGAAACCAGTTTGATATGGTTTTACAAGAAGCTTGGTTATTCGATGA
TACAGTTAGAAATAATTTAGTCTATAATCAAAAGAACGTTTCCGATGAACAAATCAAAGATGCTACTAAAGCAGTAGGAT
TGGATCATTTCATTGAAACTTTGCCAAAGGGATACGATACAGTTTTGGATGATTCAGTTAGTTTATCTGTTGGCCAAAAA
CAACTTTTGACTATTGCTAGAGCTCTGATCAGAAATGCACCAATGCTGATTTTAGATGAAGCAACAAGTTCAGTTGATAC
TAGAACTGAGGAACAGATTCAAAAGGCCATGGATATTTTAATGAAGAATCGAACTTCATTCGTTATTGCCCATCGACTTT
CAACTATTAAAAATGCTGATTTGATTTTGGTAGTTAAAGATGGTGAAATAATTGAACGTGGTACGCATGATGAATTAATG
TCAGAGAATGGTTTTTATGCAAATATGTATAACAGTCAATTTACTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-503)

ABC transporter transmembrane region (ABC_membrane)

(18-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.801

99.653

0.606

Multiple sequence alignment