Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ABWI26_RS04165 Genome accession   NZ_CP159983
Coordinates   869452..871215 (+) Length   587 a.a.
NCBI ID   WP_119325630.1    Uniprot ID   -
Organism   Companilactobacillus musae strain zy 130     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 864452..876215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWI26_RS04140 - 864655..866004 (-) 1350 WP_119325626.1 cytosine permease -
  ABWI26_RS04145 codA 866202..867434 (+) 1233 WP_119325627.1 cytosine deaminase -
  ABWI26_RS04150 - 867506..868189 (+) 684 WP_119325909.1 GTP pyrophosphokinase family protein -
  ABWI26_RS04155 - 868264..868794 (-) 531 WP_119325628.1 GNAT family N-acetyltransferase -
  ABWI26_RS04160 - 868940..869404 (+) 465 WP_119325629.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABWI26_RS04165 rcrP 869452..871215 (+) 1764 WP_119325630.1 ABC transporter ATP-binding protein Regulator
  ABWI26_RS04170 rcrQ 871212..872942 (+) 1731 WP_119325631.1 ABC transporter ATP-binding protein Regulator
  ABWI26_RS04175 - 873236..874885 (+) 1650 WP_119325632.1 alpha,alpha-phosphotrehalase -
  ABWI26_RS04180 - 874959..875690 (+) 732 WP_119325633.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65146.33 Da        Isoelectric Point: 6.9324

>NTDB_id=1016980 ABWI26_RS04165 WP_119325630.1 869452..871215(+) (rcrP) [Companilactobacillus musae strain zy 130]
MLKLFKKLNKKEYGMIGISLIFIIVQVWLELEIPSYMSTITQRLEEKGTTISQILQPGMMMILLSVLSVIASIIVGYFAA
HVAAGFTARLRKDIFDQVMDYSTHDIKNFSVSSLLTRSTNDLTQLQQFIAMGLQVIIKAPITAIWAITKIANKGWQWTTA
TAVAVVVLIVMLTFILLMVQPRFKKIQSLTDRLNLVTRENLSGIRVVHAYNAEDYQNAKFNKANKDLTDTNLFANRVLAL
MNPGMSFISSTLTLAVYAIGAIIINQATVGATRLTLFSDMIVFSSYAMQVILGFLLLSIIFILLPRVTVSVGRINEVLDV
DPSVKHLDKTEGQTTEKGVLEFKDVSFRYPGAEADAIHNLDFKAQTGQTIAFIGSTGSGKSTAMNLIPRLYDTTQGQVLV
DGIDVKDYSQKDLNNKVGYIPQKAVLFSGSIRSNLDFGSTPSGKRTDDDLYDALDVAQSRDFVEQKDKQLDAKVAQHGDN
FSGGQKQRLAIARAIARKPEILLFDDSFSALDYETDKKLREQLKEQAAQTTKVIIAQRISTIMDADLIIVLDNGHVAGQG
THEELLKSNEVYQEIAYSQLSKEELAE

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=1016980 ABWI26_RS04165 WP_119325630.1 869452..871215(+) (rcrP) [Companilactobacillus musae strain zy 130]
ATGCTAAAATTATTTAAAAAGTTAAATAAAAAAGAATATGGCATGATTGGTATTAGTTTGATATTTATTATCGTACAAGT
TTGGTTAGAACTTGAGATACCTAGTTACATGTCGACAATTACTCAAAGGCTTGAAGAAAAAGGTACTACCATAAGTCAAA
TTTTACAGCCCGGTATGATGATGATTCTCTTGTCAGTTTTGAGTGTTATAGCTTCAATCATCGTAGGGTACTTTGCAGCT
CATGTAGCGGCAGGTTTTACAGCTAGACTAAGAAAAGATATCTTTGATCAAGTTATGGATTACTCAACTCATGATATTAA
GAACTTTTCGGTTTCAAGTTTGTTAACTCGTTCAACTAATGATTTGACACAGTTGCAACAATTTATAGCTATGGGTCTAC
AAGTTATTATCAAAGCACCGATTACAGCAATCTGGGCTATTACTAAGATTGCTAATAAAGGCTGGCAATGGACTACTGCC
ACAGCTGTTGCGGTAGTAGTTTTAATTGTTATGTTAACTTTTATTCTTTTAATGGTACAACCACGATTTAAGAAAATTCA
GAGTTTGACTGACCGTTTGAATTTGGTTACTAGAGAAAATCTTTCTGGTATCAGAGTAGTTCATGCATATAATGCAGAAG
ATTATCAAAATGCTAAGTTTAATAAAGCTAATAAGGATTTAACAGATACTAATTTATTTGCTAATCGTGTTCTAGCCTTA
ATGAATCCGGGAATGAGTTTCATTTCTAGTACATTGACCTTAGCCGTTTATGCAATTGGTGCCATTATTATTAACCAGGC
AACTGTTGGAGCAACTCGGTTAACCTTATTTAGTGATATGATCGTATTTTCATCGTATGCTATGCAAGTTATTTTAGGAT
TCTTACTCTTGTCGATCATCTTTATTCTCCTACCTCGTGTAACTGTATCAGTAGGTAGAATTAATGAAGTCTTAGACGTA
GACCCTTCAGTTAAACACTTGGATAAAACTGAAGGCCAGACAACTGAAAAAGGTGTTTTAGAATTTAAAGATGTTAGTTT
CCGTTATCCTGGTGCTGAAGCTGATGCAATTCATAATTTAGATTTTAAAGCACAAACAGGTCAAACAATTGCTTTTATTG
GTTCTACCGGTAGTGGTAAATCAACAGCAATGAATTTGATTCCTCGATTATACGATACAACTCAAGGTCAAGTGTTAGTC
GATGGCATTGATGTTAAGGACTATTCTCAAAAAGACTTAAATAATAAAGTTGGTTATATTCCTCAAAAGGCAGTTCTTTT
CAGTGGATCAATTCGTTCCAATCTTGATTTTGGTTCAACACCATCAGGTAAAAGAACCGATGATGATCTTTATGATGCTT
TAGATGTAGCTCAATCAAGAGATTTTGTGGAACAAAAGGATAAGCAATTAGATGCTAAAGTGGCACAACATGGTGATAAT
TTCTCCGGTGGTCAAAAACAAAGATTAGCAATTGCTAGAGCGATTGCCAGAAAACCAGAGATTCTATTGTTTGATGATTC
ATTCTCAGCTTTAGATTATGAAACTGATAAAAAATTACGTGAACAATTAAAAGAGCAGGCTGCTCAAACTACTAAGGTTA
TCATTGCTCAAAGAATTAGTACTATTATGGATGCTGATTTGATAATAGTGTTAGATAACGGTCATGTAGCTGGTCAGGGT
ACTCATGAAGAGTTGTTGAAGAGTAATGAAGTCTATCAAGAAATTGCTTACTCACAATTATCAAAGGAGGAACTTGCTGA
ATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-281)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.376

100

0.572

Multiple sequence alignment