Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   DQL31_RS07970 Genome accession   NZ_LS483320
Coordinates   1495945..1496979 (-) Length   344 a.a.
NCBI ID   WP_002983381.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC5164     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1490945..1501979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL31_RS07935 (NCTC5164_01600) - 1491721..1492023 (-) 303 WP_111677436.1 YlxQ-related RNA-binding protein -
  DQL31_RS07940 (NCTC5164_01601) rnpM 1492016..1492312 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  DQL31_RS07945 (NCTC5164_01602) nusA 1492328..1493485 (-) 1158 WP_002983485.1 transcription termination factor NusA -
  DQL31_RS07950 (NCTC5164_01603) rimP 1493660..1494196 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  DQL31_RS07960 (NCTC5164_01605) trmB 1494455..1495090 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL31_RS07965 (NCTC5164_01606) ccrZ 1495090..1495881 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQL31_RS07970 (NCTC5164_01607) pptB 1495945..1496979 (-) 1035 WP_002983381.1 ABC transporter permease Regulator
  DQL31_RS07975 (NCTC5164_01608) pptA 1496982..1497707 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  DQL31_RS07980 (NCTC5164_01609) - 1497779..1498198 (+) 420 WP_002983376.1 HIT family protein -
  DQL31_RS07985 (NCTC5164_01610) - 1498195..1498551 (+) 357 WP_111677437.1 chemotaxis protein -
  DQL31_RS07990 (NCTC5164_01611) brpA 1498662..1499945 (-) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL31_RS07995 (NCTC5164_01612) - 1499954..1500478 (-) 525 WP_002983369.1 GNAT family N-acetyltransferase -
  DQL31_RS08000 (NCTC5164_01613) tsaE 1500453..1500914 (-) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40208.44 Da        Isoelectric Point: 10.3713

>NTDB_id=1016947 DQL31_RS07970 WP_002983381.1 1495945..1496979(-) (pptB) [Streptococcus pyogenes strain NCTC5164]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLLIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1016947 DQL31_RS07970 WP_002983381.1 1495945..1496979(-) (pptB) [Streptococcus pyogenes strain NCTC5164]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTACTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427