Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NSQ88_RS07775 Genome accession   NZ_CP159977
Coordinates   1612237..1612536 (-) Length   99 a.a.
NCBI ID   WP_363551530.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0751     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1607237..1617536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ88_RS07740 (NSQ88_07740) - 1607775..1608962 (+) 1188 WP_034771029.1 M14 family metallopeptidase -
  NSQ88_RS07745 (NSQ88_07745) - 1609130..1610254 (+) 1125 WP_363551528.1 hypothetical protein -
  NSQ88_RS07750 (NSQ88_07750) - 1610285..1610470 (-) 186 WP_034771024.1 YqzE family protein -
  NSQ88_RS07755 (NSQ88_07755) comGG 1610571..1611101 (-) 531 WP_270577459.1 competence type IV pilus minor pilin ComGG -
  NSQ88_RS07760 (NSQ88_07760) comGF 1610992..1611456 (-) 465 WP_363551529.1 competence type IV pilus minor pilin ComGF -
  NSQ88_RS07765 (NSQ88_07765) - 1611428..1611784 (-) 357 WP_270577457.1 hypothetical protein -
  NSQ88_RS07770 (NSQ88_07770) comGD 1611759..1612262 (-) 504 WP_034771013.1 competence type IV pilus minor pilin ComGD -
  NSQ88_RS07775 (NSQ88_07775) comGC 1612237..1612536 (-) 300 WP_363551530.1 competence type IV pilus major pilin ComGC Machinery gene
  NSQ88_RS07780 (NSQ88_07780) comGB 1612563..1613594 (-) 1032 WP_363551531.1 competence type IV pilus assembly protein ComGB -
  NSQ88_RS07785 (NSQ88_07785) comGA 1613569..1614654 (-) 1086 WP_034771006.1 competence type IV pilus ATPase ComGA Machinery gene
  NSQ88_RS07790 (NSQ88_07790) - 1614865..1615566 (+) 702 WP_363551532.1 helix-turn-helix domain-containing protein -
  NSQ88_RS07795 (NSQ88_07795) - 1615705..1615947 (+) 243 WP_041846286.1 DUF2626 domain-containing protein -
  NSQ88_RS07800 (NSQ88_07800) - 1616018..1616188 (+) 171 WP_034770998.1 DUF2759 domain-containing protein -
  NSQ88_RS07805 (NSQ88_07805) - 1616367..1617170 (-) 804 WP_108898278.1 YqhG family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11066.02 Da        Isoelectric Point: 5.6913

>NTDB_id=1016926 NSQ88_RS07775 WP_363551530.1 1612237..1612536(-) (comGC) [Caldifermentibacillus hisashii strain FSL W8-0751]
MLKKESGFTLIEMMIVLFVITILLLITIPNVTKHQKNISNKGCEGLENMVQAEIQAYQIDHNKLPASIDDLKNGYLKEEP
VCPDGRKIVISNGDAVIKE

Nucleotide


Download         Length: 300 bp        

>NTDB_id=1016926 NSQ88_RS07775 WP_363551530.1 1612237..1612536(-) (comGC) [Caldifermentibacillus hisashii strain FSL W8-0751]
ATGTTGAAAAAAGAATCTGGATTTACGTTAATCGAGATGATGATCGTTCTGTTCGTCATCACTATTTTACTGCTTATAAC
CATTCCAAACGTGACAAAACACCAGAAAAATATCAGCAATAAAGGCTGTGAAGGATTAGAAAATATGGTTCAGGCAGAAA
TCCAAGCCTATCAAATAGATCATAATAAATTACCTGCTTCTATTGATGACTTGAAAAACGGTTATTTAAAAGAAGAACCG
GTATGTCCGGATGGAAGGAAGATTGTTATCTCTAATGGTGACGCAGTTATCAAAGAGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

54.737

95.96

0.525
  comGC Staphylococcus aureus MW2

45.918

98.99

0.455
  comGC Staphylococcus aureus N315

45.918

98.99

0.455

Multiple sequence alignment