Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABSY19_RS11485 Genome accession   NZ_CP159956
Coordinates   2406219..2407835 (-) Length   538 a.a.
NCBI ID   WP_382162750.1    Uniprot ID   -
Organism   Hydrogenophaga sp. ANAO-22     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2401219..2412835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABSY19_RS11455 (ABSY19_11460) - 2401982..2402337 (-) 356 Protein_2265 GFA family protein -
  ABSY19_RS11460 (ABSY19_11465) - 2402369..2402833 (-) 465 WP_382162736.1 DUF1772 domain-containing protein -
  ABSY19_RS11465 (ABSY19_11470) - 2402830..2403219 (-) 390 WP_382162739.1 DUF488 domain-containing protein -
  ABSY19_RS11470 (ABSY19_11475) - 2403240..2404364 (-) 1125 WP_382162742.1 toxin-antitoxin system YwqK family antitoxin -
  ABSY19_RS11475 (ABSY19_11480) - 2404354..2404797 (-) 444 WP_382162745.1 putative toxin-antitoxin system toxin component, PIN family -
  ABSY19_RS11480 (ABSY19_11485) - 2404864..2406222 (-) 1359 WP_382162748.1 class I SAM-dependent RNA methyltransferase -
  ABSY19_RS11485 (ABSY19_11490) rpoN/rpoN1 2406219..2407835 (-) 1617 WP_382162750.1 RNA polymerase factor sigma-54 Machinery gene
  ABSY19_RS11490 (ABSY19_11495) lptB 2407840..2408637 (-) 798 WP_382162753.1 LPS export ABC transporter ATP-binding protein -
  ABSY19_RS11495 (ABSY19_11500) lptA 2408634..2409269 (-) 636 WP_382162756.1 lipopolysaccharide transport periplasmic protein LptA -
  ABSY19_RS11500 (ABSY19_11505) - 2409392..2410045 (-) 654 WP_382162759.1 thiol:disulfide interchange protein DsbA/DsbL -
  ABSY19_RS11505 (ABSY19_11510) - 2410119..2410820 (-) 702 WP_382162762.1 SPOR domain-containing protein -
  ABSY19_RS11510 (ABSY19_11515) argS 2410835..2412508 (-) 1674 WP_382162765.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 59000.48 Da        Isoelectric Point: 4.5643

>NTDB_id=1016890 ABSY19_RS11485 WP_382162750.1 2406219..2407835(-) (rpoN/rpoN1) [Hydrogenophaga sp. ANAO-22]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDDNPFLERAEEIAERETFGLEQTDVPVSAGEQIAEAALP
EAPVPLSPSLESSSASTDSGDGDGLESKLDGATPVEESWEGDGTVEMAPDDSEWGGDAPARNSGSGDNDETASAADLARA
PVSLQDHLHDQARCLRLSDEDRAALYFLIESLNDDGYLEESLAELADAWLHLSGTPQLAGDPNDALEAREALEQRLAVAL
QLLQHMEPSGVGARDLGECLRLQILELRNTAEARAALAICNQPLELMAKRDVKRLCNLCGIDDETARAALGLIARLEPKP
GRRFVDVERNVVVPDVIVTRAGRGFKVILNPDVMPRLRVHDVYANAMRQNRGGGEAGHAAMQQRLQEARWFIKNIQQRFD
TILRVSSAIVERQRNFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTYELKYFFGSSLGTETGGNASST
AVRALLKQFIAAEEPAKPLSDNQLSDLLREQGIECARRTVAKYREALRIAPANLRKAL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=1016890 ABSY19_RS11485 WP_382162750.1 2406219..2407835(-) (rpoN/rpoN1) [Hydrogenophaga sp. ANAO-22]
GTGAAACAAGGCCTGTCACTGCGCGTCTCGCAGCACCTGGCGCTCACGCCCCAGCTGCAGCAGTCGATCCGGCTGCTGCA
GCTGTCCACGCTGGAGATGGCGCAGGAAGTCGAGCAGATGCTCGACGACAACCCCTTCCTCGAGCGCGCGGAGGAAATCG
CCGAGCGCGAGACCTTCGGGCTGGAGCAGACCGATGTGCCGGTGAGCGCCGGCGAGCAGATCGCCGAGGCGGCCCTGCCC
GAGGCGCCGGTGCCCTTGTCCCCTTCCCTCGAATCCTCCAGCGCGAGCACCGACAGCGGTGACGGCGATGGCCTGGAAAG
CAAGCTGGACGGCGCCACCCCGGTGGAGGAAAGCTGGGAGGGCGACGGCACGGTGGAGATGGCGCCCGACGACAGCGAGT
GGGGTGGCGACGCGCCCGCGCGCAACAGCGGTTCGGGCGACAACGACGAGACCGCCAGCGCCGCCGACCTGGCGCGCGCC
CCGGTCAGCCTGCAGGACCACCTGCACGACCAGGCGCGCTGCCTGCGCCTGTCGGACGAGGACCGCGCCGCGCTCTACTT
CCTGATCGAGTCGCTCAACGACGACGGTTACCTGGAGGAAAGCCTGGCCGAGCTGGCCGACGCCTGGCTGCACCTCTCGG
GCACGCCCCAGCTCGCGGGCGACCCGAACGACGCGCTGGAGGCGCGCGAGGCGCTGGAGCAGCGCCTCGCGGTGGCGCTG
CAGCTGCTGCAGCACATGGAGCCCTCGGGCGTGGGCGCGCGCGACCTGGGCGAATGCCTGCGCCTGCAGATCCTGGAGCT
GCGCAACACGGCCGAGGCGCGCGCCGCGCTCGCCATCTGCAACCAGCCGCTGGAGCTCATGGCCAAGCGCGACGTGAAGC
GCCTGTGCAACCTCTGCGGCATCGACGACGAGACCGCGCGCGCCGCGCTCGGCCTGATCGCGCGCCTCGAACCCAAGCCG
GGCCGCCGCTTCGTCGACGTGGAGCGCAACGTGGTCGTGCCCGACGTGATCGTCACGCGCGCCGGCCGGGGCTTCAAGGT
CATCCTCAATCCCGACGTGATGCCGCGCTTGCGCGTGCACGATGTCTACGCCAACGCCATGCGGCAGAACCGCGGCGGTG
GCGAGGCCGGCCACGCCGCCATGCAGCAGCGCCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGAC
ACCATCCTGCGCGTCTCCAGCGCCATCGTCGAGCGCCAGCGCAACTTCTTCATGCACGGCGAACTCGCCATGCGCCCGCT
GGTGCTGCGCGAGATCGCCGACGAACTCGGCCTGCACGAATCCACCATCAGCCGCGTGACCACCGCCAAGTACATGGCCA
CGCCCTTCGGCACCTACGAGCTCAAGTACTTCTTCGGCTCGTCGCTGGGCACCGAGACCGGCGGCAACGCCTCCAGCACG
GCGGTGCGCGCGCTGCTCAAGCAGTTCATCGCCGCCGAGGAGCCCGCCAAGCCGCTGTCGGACAACCAGCTCTCCGACCT
GCTGCGCGAGCAGGGCATCGAGTGCGCGCGCCGCACGGTGGCCAAATACCGCGAGGCGCTGCGCATCGCGCCCGCGAACC
TGCGCAAAGCACTGTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(156-363)

Sigma-54, DNA binding domain (Sigma54_DBD)

(380-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.549

100

0.513

Multiple sequence alignment