Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABSY19_RS01495 Genome accession   NZ_CP159956
Coordinates   360427..361191 (+) Length   254 a.a.
NCBI ID   WP_291119609.1    Uniprot ID   -
Organism   Hydrogenophaga sp. ANAO-22     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355427..366191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABSY19_RS01475 (ABSY19_01470) ndk 356491..356916 (-) 426 WP_086123506.1 nucleoside-diphosphate kinase -
  ABSY19_RS01480 (ABSY19_01475) - 357031..358572 (-) 1542 WP_382163998.1 pseudouridine synthase -
  ABSY19_RS01485 (ABSY19_01480) scpB 358639..359100 (-) 462 Protein_296 SMC-Scp complex subunit ScpB -
  ABSY19_RS01490 (ABSY19_01485) - 359300..360310 (-) 1011 WP_382158429.1 RluA family pseudouridine synthase -
  ABSY19_RS01495 (ABSY19_01490) comL 360427..361191 (+) 765 WP_291119609.1 outer membrane protein assembly factor BamD Machinery gene
  ABSY19_RS01500 (ABSY19_01495) - 361154..363187 (-) 2034 WP_382158431.1 ATP-dependent DNA helicase -
  ABSY19_RS01505 (ABSY19_01500) - 363352..364110 (+) 759 WP_291119577.1 PP2C family serine/threonine-protein phosphatase -
  ABSY19_RS01510 (ABSY19_01505) zapE 364119..365216 (-) 1098 WP_291119574.1 cell division protein ZapE -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28660.05 Da        Isoelectric Point: 5.8017

>NTDB_id=1016886 ABSY19_RS01495 WP_291119609.1 360427..361191(+) (comL) [Hydrogenophaga sp. ANAO-22]
MASALVLSACSTTPVDETAGWSPNRIYSEATEERAAGNYEKSVTLYEKLEGRAAGTPLAQQAQLDKAYAQYKAGEQAQAL
ATLDRFQKLHPTSPAMDYALYLKGLVNFNDNLGLFGSLARQDLSERDQKAAKESFEAFRELVSRFPDSRYSPDARDRMTY
IVNSLAQYEVHVARYYHSRGAYVAAINRAQTALTDYVNAPALEEALFIMLRSYEALGLTQLRDDTRRVMQASYPNSEYLS
QGFKSKDDPWWKIW

Nucleotide


Download         Length: 765 bp        

>NTDB_id=1016886 ABSY19_RS01495 WP_291119609.1 360427..361191(+) (comL) [Hydrogenophaga sp. ANAO-22]
ATGGCCTCGGCGCTGGTGCTCAGCGCATGCAGCACGACGCCCGTGGATGAAACGGCCGGCTGGAGCCCGAACCGAATCTA
CAGCGAAGCGACCGAAGAGCGTGCCGCCGGCAACTACGAGAAGTCGGTGACGCTGTACGAAAAGCTCGAAGGCCGTGCCG
CCGGCACCCCCCTGGCCCAGCAGGCCCAGCTCGACAAGGCTTACGCGCAGTACAAGGCCGGCGAACAAGCCCAGGCGCTG
GCCACCCTCGACCGCTTCCAGAAACTCCATCCCACCAGCCCGGCGATGGACTATGCCCTGTACCTCAAGGGGCTGGTGAA
TTTCAACGACAACCTCGGCCTCTTCGGCTCGCTGGCGCGCCAGGATCTGTCCGAACGCGATCAGAAAGCCGCCAAGGAAT
CGTTCGAAGCGTTCCGCGAGCTCGTCTCGCGGTTCCCGGATTCCCGCTACAGCCCCGATGCCCGGGACCGCATGACGTAC
ATCGTCAACTCGCTGGCGCAGTACGAGGTCCATGTCGCGCGCTACTACCACAGCCGAGGCGCCTACGTGGCGGCCATCAA
CCGCGCCCAGACGGCCTTGACCGACTACGTCAACGCGCCGGCGCTCGAAGAAGCCCTCTTCATCATGCTGCGGTCCTATG
AGGCGCTGGGCCTGACGCAGCTGCGCGACGACACCCGCCGCGTGATGCAGGCCAGTTACCCGAACAGCGAGTACCTGAGC
CAGGGTTTCAAGTCCAAAGACGATCCCTGGTGGAAGATCTGGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(23-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

48.438

100

0.488
  comL Neisseria gonorrhoeae MS11

46.094

100

0.465

Multiple sequence alignment