Detailed information NTG1016635

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABVT50_RS09320
• Genome accession: NZ_CP159888
• Coordinates: 2115335..2116807 (-)
• Length: 490 a.a.
• NCBI ID: WP_369608497.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer04
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2110335..2121807

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVT50_RS09305 (ABVT50_14540)	amgK	2112463..2113467 (+)	1005	WP_369608494.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
ABVT50_RS09310 (ABVT50_16865)	-	2113520..2114503 (-)	984	WP_369608495.1	hypothetical protein	-
ABVT50_RS09315 (ABVT50_14520)	-	2114574..2115335 (-)	762	WP_369608496.1	class I SAM-dependent methyltransferase	-
ABVT50_RS09320 (ABVT50_14515)	pilR	2115335..2116807 (-)	1473	WP_369608497.1	sigma-54-dependent transcriptional regulator	Regulator
ABVT50_RS09325 (ABVT50_16870)	-	2116800..2118374 (-)	1575	WP_369608498.1	ATP-binding protein	-
ABVT50_RS09330 (ABVT50_14500)	parC	2118381..2120699 (-)	2319	WP_369608499.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 490 a.a.
• Molecular weight: 54598.25 Da
• Isoelectric Point: 6.2030

>NTDB_id=1016635 ABVT50_RS09320 WP_369608497.1 2115335..2116807(-) (pilR) [Snodgrassella alvi strain Acer04]
MNSQVELKKPVLVIDDEADIRDLMELTLIKMGLSVQTAAGVAEAKKALRNHAFSLVLTDMRMPDGSGLEIVDYITEHNLD
IPIAVITAYGNAVQAVQALKNGAFDYLQKPITLAQLRTLVKSVLTINHSSDTDSITKAVINTKQSEVKSQNVSEPGRGSQ
SAAQERLLGHSPLIAEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSARKDKAFVAVNCGAIPEALMESEFFGYK
KGSFTGADNDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVETGQF
RQDLFYRLNVVSITMPPLRELRDDLPELIQVLLRRILRDETMTLSPAAEQALLQYSYPGNFRELENILERAIALSKNHII
EVDDLQIQSLSFDNQRNLSVDSVRNSAGENPARTDFQFGHTQIQDYLDDVERHILQQALAQTRYNRTQAAKLLGISFRSM
RYRMERLGIA

Nucleotide

• Length: 1473 bp

>NTDB_id=1016635 ABVT50_RS09320 WP_369608497.1 2115335..2116807(-) (pilR) [Snodgrassella alvi strain Acer04]
ATGAATAGTCAGGTAGAATTAAAAAAGCCAGTGCTGGTAATAGATGATGAAGCTGATATTCGTGATTTAATGGAATTAAC
CCTGATAAAAATGGGTTTATCTGTCCAGACCGCTGCCGGAGTGGCTGAAGCCAAAAAAGCATTACGTAATCATGCTTTCT
CTCTGGTACTTACTGATATGCGCATGCCAGACGGATCTGGTCTGGAAATTGTAGATTATATAACCGAGCATAATCTGGAT
ATTCCCATTGCTGTGATTACTGCTTACGGTAATGCAGTGCAAGCAGTGCAGGCATTAAAAAATGGTGCTTTTGATTATCT
GCAAAAACCCATTACTCTGGCACAACTACGCACATTAGTTAAATCTGTGCTGACAATCAACCATAGCTCTGATACCGACT
CCATTACTAAAGCAGTCATAAACACTAAACAATCTGAAGTGAAATCCCAGAATGTTTCTGAGCCAGGTAGAGGGAGCCAA
AGTGCTGCTCAAGAGCGATTGCTTGGTCACTCCCCTTTAATTGCTGAAGTGCGACAATTAATAAGCAAACTGGCTAAATC
CAATGTACCAGTCTATATTGCTGGGGAATCCGGTAGTGGAAAAGAGCAAGCTGCCCGCAGTATTCATGAACAATCAGCAC
GTAAAGATAAAGCATTTGTTGCAGTCAATTGCGGAGCGATTCCTGAAGCATTGATGGAAAGTGAGTTTTTTGGTTATAAA
AAAGGGAGTTTTACCGGCGCAGACAATGACAGAGCAGGATTTTTTCAGCATGCAGATGGTGGTACATTATTTTTGGATGA
AGTAGCTGATTTGCCATTGTCCATGCAGGTAAAGCTTTTGCGTGCCATTCAGGAACGAGCTGTTCGCCGGATTGGTGAAA
TGGAAGAAAAGCAGGTTGATGTCCGTATTATCTGTGCTACTCATAAAGACCTGAATGCTTTGGTAGAAACAGGACAATTT
CGGCAGGATTTGTTTTACCGTCTAAATGTGGTGTCCATAACCATGCCCCCCTTACGTGAATTACGTGATGATTTACCAGA
ACTGATTCAGGTTTTGTTGCGACGTATTCTACGTGATGAAACCATGACCCTGAGCCCAGCAGCTGAGCAAGCTTTATTGC
AATATAGCTATCCCGGCAATTTCCGCGAGCTGGAAAATATATTAGAACGAGCAATTGCTTTATCAAAAAATCATATTATC
GAAGTTGATGATTTACAGATTCAAAGTCTCTCATTTGATAATCAGCGTAATTTATCAGTAGATAGTGTCCGTAATTCTGC
CGGGGAAAATCCCGCAAGGACAGATTTTCAGTTTGGTCACACCCAGATTCAGGACTATCTCGACGATGTAGAACGTCATA
TTCTGCAGCAGGCGCTGGCACAAACCCGTTATAACCGTACACAAGCGGCAAAACTATTGGGAATCAGCTTTAGATCAATG
CGTTATCGGATGGAACGATTGGGTATTGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (447-486)

• Sigma-54 interaction domain (Sigma54_activat) (168-333)

• Response regulator receiver domain (Response_reg) (11-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	49.383	99.184	0.49
pilR	Acinetobacter baumannii strain A118	41.736	98.776	0.412